Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.39□□□□□ -1.71
SF3A1Q15459 RPS15AP5-201ENST00000436276 388 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AC093019.1-201ENST00000443135 252 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 MRPL50P4-201ENST00000446432 475 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AL136097.1-201ENST00000456945 913 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 RPL7P43-201ENST00000478876 753 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AL049830.2-201ENST00000480072 201 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AC103851.1-201ENST00000506833 274 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AC114781.4-201ENST00000513707 639 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AC037471.2-201ENST00000564941 598 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.39□□□□□ -1.71
SF3A1Q15459 AC243960.4-201ENST00000600532 288 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AC087045.1-201ENST00000605856 382 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 FAM157A-202ENST00000615155 405 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 MIR6500-201ENST00000622700 86 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AC007496.3-201ENST00000624987 3443 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SF3A1Q15459 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SF3A1Q15459 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
SF3A1Q15459 MIR372-201ENST00000362225 67 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 RNU1-18P-201ENST00000363062 164 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 Y_RNA.142-201ENST00000363491 102 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 SNORA14A-201ENST00000364773 135 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 RNU6-214P-201ENST00000384130 107 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 RNU6-72P-201ENST00000384285 79 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 RNU1-13P-201ENST00000384499 162 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.38□□□□□ -1.71
SF3A1Q15459 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.38□□□□□ -1.71
SF3A1Q15459 AC098831.1-201ENST00000440661 216 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 AL031274.1-201ENST00000450334 232 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 HMGN1P11-201ENST00000508668 303 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.38□□□□□ -1.71
SF3A1Q15459 RAC1P2-201ENST00000511164 579 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 RNA5SP208-201ENST00000516156 78 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SF3A1Q15459 AC091135.1-201ENST00000585943 307 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.38□□□□□ -1.71
SF3A1Q15459 AL022345.1-201ENST00000607292 135 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 RMST_7.1-201ENST00000621935 268 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 SCARNA4-202ENST00000625402 129 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SF3A1Q15459 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.38□□□□□ -1.71
SF3A1Q15459 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.38□□□□□ -1.71
SF3A1Q15459 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.38□□□□□ -1.71
SF3A1Q15459 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.38□□□□□ -1.71
SF3A1Q15459 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
SF3A1Q15459 MIR423-201ENST00000362201 94 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AL122016.1-201ENST00000403365 367 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 U3.37-201ENST00000408528 213 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 RNU2-49P-201ENST00000410666 184 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 RNA5SP31-201ENST00000411144 127 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AC093151.1-201ENST00000427711 313 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.37□□□□□ -1.71
SF3A1Q15459 AL359672.1-201ENST00000442302 409 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 SNRPEP8-201ENST00000442866 260 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.37□□□□□ -1.71
SF3A1Q15459 AC092001.1-201ENST00000453012 261 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.37□□□□□ -1.71
SF3A1Q15459 AL121821.2-201ENST00000556081 394 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AC120057.2-201ENST00000571520 271 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AC020895.1-201ENST00000595362 272 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AL137849.1-201ENST00000604767 169 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.37□□□□□ -1.71
SF3A1Q15459 ATP5A1P2-202ENST00000616464 443 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.37□□□□□ -1.71
SF3A1Q15459 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SF3A1Q15459 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.37□□□□□ -1.71
SF3A1Q15459 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.37□□□□□ -1.71
SF3A1Q15459 AC010680.1-201ENST00000590024 3590 ntBASIC4.37□□□□□ -1.71
SF3A1Q15459 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
SF3A1Q15459 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SF3A1Q15459 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.36□□□□□ -1.71
SF3A1Q15459 SNORD73A-201ENST00000386062 65 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 AL159987.2-201ENST00000432754 307 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 HIGD1AP2-201ENST00000446367 280 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 HMGN2P10-201ENST00000448085 265 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.36□□□□□ -1.71
SF3A1Q15459 RN7SKP83-201ENST00000516512 178 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 RN7SKP209-201ENST00000516888 304 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 AP004607.1-201ENST00000524456 203 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.36□□□□□ -1.71
SF3A1Q15459 AC245389.1-201ENST00000605141 529 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 AC011890.2-201ENST00000613393 294 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 Z69720.2-201ENST00000624755 279 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 TPTEP1-208ENST00000636884 213 ntBASIC4.36□□□□□ -1.71
SF3A1Q15459 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
SF3A1Q15459 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SF3A1Q15459 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.36□□□□□ -1.71
SF3A1Q15459 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.35□□□□□ -1.71
SF3A1Q15459 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.35□□□□□ -1.71
SF3A1Q15459 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
SF3A1Q15459 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms