Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MIR4765-201ENST00000585007 77 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 BBIP1P1-201ENST00000602999 279 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 AL391646.1-201ENST00000603860 190 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 AC080188.3-201ENST00000624842 748 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.12□□□□□ -2.23
CHD3Q12873 RNU6-932P-201ENST00000391108 106 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 SNORA40C-201ENST00000391285 128 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AL133264.1-201ENST00000407157 562 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 TPMTP3-201ENST00000411928 735 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 SRIP3-201ENST00000413200 219 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 USP9YP26-201ENST00000421008 661 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AL121601.2-201ENST00000438019 707 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CHD3Q12873 AL078601.1-201ENST00000444542 271 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AC112518.2-201ENST00000508565 425 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.11□□□□□ -2.23
CHD3Q12873 FAM206BP-201ENST00000510179 541 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.11□□□□□ -2.23
CHD3Q12873 AC006518.2-201ENST00000542513 940 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AC068338.1-201ENST00000565567 176 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AC138915.2-201ENST00000569776 97 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.11□□□□□ -2.23
CHD3Q12873 AL158211.4-201ENST00000606988 584 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.11□□□□□ -2.23
CHD3Q12873 AP003399.1-201ENST00000637534 361 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.11□□□□□ -2.23
CHD3Q12873 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CHD3Q12873 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.11□□□□□ -2.23
CHD3Q12873 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CHD3Q12873 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CHD3Q12873 MFSD8-213ENST00000641134 1327 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 RNU2-32P-201ENST00000411193 191 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.11□□□□□ -2.23
CHD3Q12873 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.11□□□□□ -2.23
CHD3Q12873 ZFAND6P1-201ENST00000434138 605 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 HMGN2P10-201ENST00000448085 265 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 RPL39P6-201ENST00000448289 150 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 KATNBL1P6-201ENST00000453433 915 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 RFC5P1-201ENST00000454419 874 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 RPS20P20-201ENST00000460498 340 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.11□□□□□ -2.23
CHD3Q12873 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CHD3Q12873 RN7SKP49-201ENST00000516675 260 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.11□□□□□ -2.23
CHD3Q12873 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.11□□□□□ -2.23
CHD3Q12873 AL121652.1-201ENST00000608851 448 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 MTND1P37-201ENST00000636562 264 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 AC007785.2-201ENST00000598627 1916 ntBASIC1.11□□□□□ -2.23
CHD3Q12873 Y_RNA.548-201ENST00000384656 105 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD3Q12873 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.1□□□□□ -2.23
CHD3Q12873 TRIM60P13-201ENST00000432350 1283 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.1□□□□□ -2.23
CHD3Q12873 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.1□□□□□ -2.23
CHD3Q12873 AC016691.1-201ENST00000441321 413 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD3Q12873 SNRPFP3-201ENST00000457792 225 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AC006512.1-201ENST00000468816 291 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.1□□□□□ -2.23
CHD3Q12873 MIR5000-201ENST00000577717 103 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 MIR4637-201ENST00000582405 84 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 ZNF92P2-201ENST00000600543 1059 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AC008121.1-201ENST00000603244 268 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AC026741.1-201ENST00000605892 482 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.1□□□□□ -2.23
CHD3Q12873 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
CHD3Q12873 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
CHD3Q12873 RNU6-1066P-201ENST00000363573 105 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
CHD3Q12873 CCDC58P2-201ENST00000417131 366 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 RPS3AP44-201ENST00000425466 790 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 RPL7P34-201ENST00000433316 712 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD3Q12873 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD3Q12873 AC117503.1-201ENST00000472241 394 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 LARP1BP2-201ENST00000486594 519 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 RPS3AP22-201ENST00000488297 769 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 MTCYBP35-201ENST00000503630 1137 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.1□□□□□ -2.23
CHD3Q12873 MIR4666A-201ENST00000580160 79 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AC016727.2-201ENST00000603988 621 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AL450336.1-201ENST00000605180 586 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AL021997.1-201ENST00000605757 193 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 MIR98-201ENST00000606724 119 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AL589743.7-201ENST00000612637 233 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 AC099842.1-201ENST00000619919 596 ntBASIC1.1□□□□□ -2.23
CHD3Q12873 CBX3P1-201ENST00000325243 554 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 SNORD56.4-201ENST00000363883 71 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 Y_RNA.295-201ENST00000364918 102 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 TAF13P2-201ENST00000416876 286 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 MTCO1P53-201ENST00000441633 699 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.09□□□□□ -2.24
CHD3Q12873 AC026410.2-201ENST00000460281 156 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 SNORA31.6-201ENST00000516241 130 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 RNU6-528P-201ENST00000516926 100 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 AC100814.1-201ENST00000606963 623 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 AC243773.3-201ENST00000613270 256 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 AC104763.3-201ENST00000613765 618 ntBASIC1.09□□□□□ -2.24
CHD3Q12873 AL773524.1-201ENST00000614065 229 ntBASIC1.09□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms