Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RN7SKP219-201ENST00000516825 296 ntBASIC3.37□□□□□ -1.87
CTCFP49711 RNU6-445P-201ENST00000516949 107 ntBASIC3.37□□□□□ -1.87
CTCFP49711 RNA5SP471-201ENST00000516971 106 ntBASIC3.37□□□□□ -1.87
CTCFP49711 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.37□□□□□ -1.87
CTCFP49711 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.37□□□□□ -1.87
CTCFP49711 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.37□□□□□ -1.87
CTCFP49711 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.37□□□□□ -1.87
CTCFP49711 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.37□□□□□ -1.87
CTCFP49711 AL136363.2-201ENST00000604173 851 ntBASIC3.37□□□□□ -1.87
CTCFP49711 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.37□□□□□ -1.87
CTCFP49711 AC034102.8-201ENST00000615146 484 ntBASIC3.37□□□□□ -1.87
CTCFP49711 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.37□□□□□ -1.87
CTCFP49711 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.37□□□□□ -1.87
CTCFP49711 LRRC77P-213ENST00000637727 880 ntBASIC3.37□□□□□ -1.87
CTCFP49711 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CTCFP49711 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.37□□□□□ -1.87
CTCFP49711 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
CTCFP49711 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.36□□□□□ -1.87
CTCFP49711 AC073343.1-201ENST00000328239 651 ntBASIC3.36□□□□□ -1.87
CTCFP49711 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CTCFP49711 RNU6-946P-201ENST00000383878 107 ntBASIC3.36□□□□□ -1.87
CTCFP49711 MIR512-1-201ENST00000384913 84 ntBASIC3.36□□□□□ -1.87
CTCFP49711 AL135786.1-201ENST00000415892 214 ntBASIC3.36□□□□□ -1.87
CTCFP49711 AC093151.1-201ENST00000427711 313 ntBASIC3.36□□□□□ -1.87
CTCFP49711 MTCO2P11-201ENST00000431069 680 ntBASIC3.36□□□□□ -1.87
CTCFP49711 RPL23AP30-201ENST00000432419 501 ntBASIC3.36□□□□□ -1.87
CTCFP49711 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.36□□□□□ -1.87
CTCFP49711 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.36□□□□□ -1.87
CTCFP49711 AC132479.1-201ENST00000449160 144 ntBASIC3.36□□□□□ -1.87
CTCFP49711 AL031183.1-201ENST00000457667 207 ntBASIC3.36□□□□□ -1.87
CTCFP49711 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.36□□□□□ -1.87
CTCFP49711 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.36□□□□□ -1.87
CTCFP49711 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.36□□□□□ -1.87
CTCFP49711 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.36□□□□□ -1.87
CTCFP49711 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.36□□□□□ -1.87
CTCFP49711 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.36□□□□□ -1.87
CTCFP49711 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.36□□□□□ -1.87
CTCFP49711 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.36□□□□□ -1.87
CTCFP49711 AL121992.2-201ENST00000606262 256 ntBASIC3.36□□□□□ -1.87
CTCFP49711 AC090617.7-201ENST00000623952 126 ntBASIC3.36□□□□□ -1.87
CTCFP49711 AC099654.7-201ENST00000635788 2127 ntBASIC3.36□□□□□ -1.87
CTCFP49711 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.36□□□□□ -1.87
CTCFP49711 AC008669.1-201ENST00000565823 2178 ntBASIC3.36□□□□□ -1.87
CTCFP49711 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.36□□□□□ -1.87
CTCFP49711 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CTCFP49711 AC093831.2-201ENST00000624393 3427 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AC092447.7-201ENST00000422212 1621 ntBASIC3.35□□□□□ -1.87
CTCFP49711 RNU6-1167P-201ENST00000363227 94 ntBASIC3.35□□□□□ -1.87
CTCFP49711 RNU6-270P-201ENST00000364131 105 ntBASIC3.35□□□□□ -1.87
CTCFP49711 Y_RNA.355-201ENST00000365462 98 ntBASIC3.35□□□□□ -1.87
CTCFP49711 RNU6-108P-201ENST00000365558 107 ntBASIC3.35□□□□□ -1.87
CTCFP49711 RNU5A-6P-201ENST00000384136 116 ntBASIC3.35□□□□□ -1.87
CTCFP49711 RNU6-1042P-201ENST00000384204 107 ntBASIC3.35□□□□□ -1.87
CTCFP49711 RNU6-817P-201ENST00000391083 104 ntBASIC3.35□□□□□ -1.87
CTCFP49711 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.35□□□□□ -1.87
CTCFP49711 AC104332.2-201ENST00000429959 156 ntBASIC3.35□□□□□ -1.87
CTCFP49711 GPR143P-201ENST00000434155 205 ntBASIC3.35□□□□□ -1.87
CTCFP49711 DNAJC19P4-201ENST00000440115 345 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.35□□□□□ -1.87
CTCFP49711 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.35□□□□□ -1.87
CTCFP49711 RPL36AP21-201ENST00000490372 323 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AL160314.1-201ENST00000490836 438 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.35□□□□□ -1.87
CTCFP49711 RNA5SP217-201ENST00000515959 91 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.35□□□□□ -1.87
CTCFP49711 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.35□□□□□ -1.87
CTCFP49711 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.35□□□□□ -1.87
CTCFP49711 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.35□□□□□ -1.87
CTCFP49711 AL161798.1-201ENST00000604630 131 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AL022154.1-201ENST00000604698 785 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AL365204.3-201ENST00000612448 685 ntBASIC3.35□□□□□ -1.87
CTCFP49711 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CTCFP49711 AC091903.1-201ENST00000624322 454 ntBASIC3.35□□□□□ -1.87
CTCFP49711 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.35□□□□□ -1.87
CTCFP49711 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CTCFP49711 MTND5P26-201ENST00000426018 1752 ntBASIC3.35□□□□□ -1.87
CTCFP49711 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
CTCFP49711 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CTCFP49711 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CTCFP49711 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CTCFP49711 RNU6-259P-201ENST00000383999 107 ntBASIC3.34□□□□□ -1.87
CTCFP49711 RNU6-74P-201ENST00000384235 107 ntBASIC3.34□□□□□ -1.87
CTCFP49711 RNU2-39P-201ENST00000410604 198 ntBASIC3.34□□□□□ -1.87
CTCFP49711 BTF3L4P3-201ENST00000418879 476 ntBASIC3.34□□□□□ -1.87
CTCFP49711 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.34□□□□□ -1.87
CTCFP49711 AL139415.2-201ENST00000431968 163 ntBASIC3.34□□□□□ -1.87
CTCFP49711 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.34□□□□□ -1.87
CTCFP49711 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CTCFP49711 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.34□□□□□ -1.87
CTCFP49711 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.34□□□□□ -1.87
CTCFP49711 AL590639.1-201ENST00000456484 337 ntBASIC3.34□□□□□ -1.87
CTCFP49711 RN7SL75P-201ENST00000461926 281 ntBASIC3.34□□□□□ -1.87
CTCFP49711 RPS3AP17-201ENST00000472594 777 ntBASIC3.34□□□□□ -1.87
CTCFP49711 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
CTCFP49711 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
CTCFP49711 RPL37P25-201ENST00000507308 276 ntBASIC3.34□□□□□ -1.87
CTCFP49711 AC108078.1-201ENST00000508073 725 ntBASIC3.34□□□□□ -1.87
CTCFP49711 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.34□□□□□ -1.87
CTCFP49711 RNU6-410P-201ENST00000517006 107 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms