Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 SNORA62.1-201ENST00000364287 154 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 RNU6-61P-201ENST00000365528 109 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 RNU6-190P-201ENST00000384154 102 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 Y_RNA.554-201ENST00000384672 102 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SHMT1P34896 FAT1P1-201ENST00000406588 507 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 RNU2-33P-201ENST00000410344 192 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.23□□□□□ -1.89
SHMT1P34896 BTF3L4P3-201ENST00000418879 476 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.23□□□□□ -1.89
SHMT1P34896 AL109913.1-201ENST00000421173 514 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC112220.1-201ENST00000434628 355 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 UBE2V1P8-201ENST00000437166 265 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 RPS29P6-201ENST00000438196 145 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 MTATP6P13-201ENST00000438531 667 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.23□□□□□ -1.89
SHMT1P34896 FABP5P13-201ENST00000452144 328 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC006512.1-201ENST00000468816 291 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.23□□□□□ -1.89
SHMT1P34896 AC090525.1-201ENST00000479116 478 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.23□□□□□ -1.89
SHMT1P34896 AC105417.1-201ENST00000514691 285 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 RNU6-1282P-201ENST00000516735 96 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.23□□□□□ -1.89
SHMT1P34896 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.23□□□□□ -1.89
SHMT1P34896 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.23□□□□□ -1.89
SHMT1P34896 OR5AL2P-201ENST00000532185 920 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.23□□□□□ -1.89
SHMT1P34896 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.23□□□□□ -1.89
SHMT1P34896 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.23□□□□□ -1.89
SHMT1P34896 TRAV28-201ENST00000557548 323 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC025678.1-201ENST00000567861 338 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 MIR4775-201ENST00000581168 75 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC107294.1-201ENST00000609524 467 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC090517.2-201ENST00000614966 680 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AP001486.3-201ENST00000615334 372 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 uc_338.11-201ENST00000619132 160 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.23□□□□□ -1.89
SHMT1P34896 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.23□□□□□ -1.89
SHMT1P34896 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SHMT1P34896 API5P2-201ENST00000397055 1498 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AC103988.1-201ENST00000566382 2177 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SHMT1P34896 UBE2L2-201ENST00000254302 429 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 FTLP6-201ENST00000355274 422 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 RNU6-859P-201ENST00000362728 107 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 RNU6-1167P-201ENST00000363227 94 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 RNU6-288P-201ENST00000363690 104 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 U3.12-201ENST00000364498 214 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 MIR181A2-201ENST00000384863 110 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 CIR1P3-201ENST00000405137 479 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.22□□□□□ -1.89
SHMT1P34896 RPS12P24-201ENST00000412619 387 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.22□□□□□ -1.89
SHMT1P34896 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.22□□□□□ -1.89
SHMT1P34896 AC007919.1-201ENST00000429380 217 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 ARL5AP4-201ENST00000430731 512 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.22□□□□□ -1.89
SHMT1P34896 AC092573.2-201ENST00000434546 243 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 USP9YP28-201ENST00000435142 589 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 SNRPEP4-201ENST00000435815 279 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 RPL7P54-201ENST00000438336 674 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.22□□□□□ -1.89
SHMT1P34896 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.22□□□□□ -1.89
SHMT1P34896 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SHMT1P34896 RNU7-63P-201ENST00000459054 62 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 RNA5SP310-201ENST00000459084 116 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 RPL36AP51-201ENST00000487216 318 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 RPL39P36-201ENST00000490784 156 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.22□□□□□ -1.89
SHMT1P34896 AC011352.1-201ENST00000512300 793 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 MTND4LP26-201ENST00000518144 282 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 CASP1P1-201ENST00000526345 212 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 OR5AQ1P-201ENST00000527596 927 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 ADI1P3-201ENST00000549509 470 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AL157687.1-201ENST00000554853 619 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 ZNF861P-201ENST00000588126 639 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AP001596.2-201ENST00000608410 312 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AL359547.2-201ENST00000615810 418 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 AC010338.1-201ENST00000621823 717 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.22□□□□□ -1.89
SHMT1P34896 TPTE2P4-201ENST00000258589 1605 ntBASIC3.22□□□□□ -1.89
SHMT1P34896 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.22□□□□□ -1.89
SHMT1P34896 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.21□□□□□ -1.9
SHMT1P34896 ELF2P3-201ENST00000445099 1506 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 RNU4-12P-201ENST00000365233 139 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 SNORA1.3-201ENST00000384676 136 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 RNU6-1158P-201ENST00000391167 107 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC068050.1-201ENST00000394891 380 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AL139397.2-201ENST00000404529 772 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 MIR548F1-201ENST00000408667 84 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.21□□□□□ -1.9
SHMT1P34896 CALM2P2-201ENST00000428512 440 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.21□□□□□ -1.9
SHMT1P34896 HIGD1AP11-201ENST00000438361 280 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 Z82210.1-201ENST00000440037 231 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 PIGFP3-201ENST00000441918 722 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.21□□□□□ -1.9
SHMT1P34896 AC083798.1-201ENST00000472671 131 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC006445.2-201ENST00000510061 472 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms