Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC9P31274 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC9P31274 AC008264.2-201ENST00000610193 3731 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC9P31274 AC073343.1-201ENST00000328239 651 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC9P31274 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC9P31274 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC9P31274 Y_RNA.505-201ENST00000384489 102 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 RNU2-39P-201ENST00000410604 198 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AL513331.1-201ENST00000411908 397 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AL135786.1-201ENST00000415892 214 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 SDCBPP3-201ENST00000419629 891 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC9P31274 NDUFB4P7-201ENST00000423198 363 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 BX276092.3-201ENST00000424182 230 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 MED13P1-201ENST00000428342 171 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC9P31274 NDUFB4P6-201ENST00000436819 366 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 RPS15AP9-201ENST00000439856 381 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXC9P31274 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC9P31274 FDX1P2-201ENST00000450769 375 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 HMGB1P29-201ENST00000505659 499 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXC9P31274 RNA5SP281-201ENST00000516504 135 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 RN7SKP258-201ENST00000517151 304 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC9P31274 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
HOXC9P31274 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXC9P31274 AP006587.4-201ENST00000526053 529 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AC021269.2-201ENST00000532318 330 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HOXC9P31274 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC9P31274 MIR5092-201ENST00000583139 88 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXC9P31274 AC004492.1-201ENST00000607036 742 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC9P31274 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC9P31274 MTND5P6-201ENST00000422338 1798 ntBASIC3.23□□□□□ -1.89
HOXC9P31274 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC9P31274 RNU6-288P-201ENST00000363690 104 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 RNU6-946P-201ENST00000383878 107 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 Y_RNA.409-201ENST00000383990 98 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 MIR325-201ENST00000385260 98 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 RNU6-1197P-201ENST00000391183 107 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 Y_RNA.619-201ENST00000410951 90 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC007064.1-201ENST00000412238 351 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC9P31274 AL356320.1-201ENST00000429616 163 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC104389.3-201ENST00000445629 235 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC9P31274 AC079781.2-201ENST00000446424 169 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 FABP5P13-201ENST00000452144 328 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 NDUFAF4P4-201ENST00000454883 502 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXC9P31274 AC013267.1-201ENST00000458227 267 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 RNA5SP310-201ENST00000459084 116 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 SRRM1P2-201ENST00000464531 1192 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AP002884.2-201ENST00000471647 395 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC079382.1-201ENST00000493346 557 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC026436.1-201ENST00000510537 270 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC9P31274 RNU6-506P-201ENST00000516553 94 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 RNU6-314P-201ENST00000516574 104 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 IGKV3-31-201ENST00000523109 329 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC9P31274 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC9P31274 AC080078.2-201ENST00000603766 501 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AL391646.1-201ENST00000603860 190 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC007363.1-201ENST00000604736 620 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC9P31274 AL021997.1-201ENST00000605757 193 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 MIR7843-201ENST00000622274 79 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 AC009161.2-201ENST00000624626 138 ntBASIC3.22□□□□□ -1.89
HOXC9P31274 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC9P31274 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC9P31274 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXC9P31274 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC9P31274 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC9P31274 Y_RNA.367-201ENST00000365544 101 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 RNU6-108P-201ENST00000365558 107 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 Y_RNA.381-201ENST00000365666 102 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 BTF3P7-201ENST00000407097 488 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 AC114491.1-201ENST00000416095 246 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 HMGB1P27-201ENST00000431429 603 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 MTATP6P16-201ENST00000434543 526 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 HMGB3P12-201ENST00000438745 556 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 AC009237.8-201ENST00000445492 379 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 CBWD4P-201ENST00000445695 655 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 AC133134.1-201ENST00000466800 359 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 UBL5P3-201ENST00000475112 231 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC9P31274 AC117522.1-201ENST00000509821 380 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC9P31274 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC9P31274 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC9P31274 OR4R1P-201ENST00000529879 463 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC9P31274 AC025449.1-201ENST00000603896 529 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms