Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC069240.1-201ENST00000548774 375 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC026371.1-201ENST00000551867 419 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AL157871.3-201ENST00000557231 293 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 AC087499.8-201ENST00000578406 226 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXD3P31249 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 RNU6-85P-201ENST00000605989 107 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC107294.1-201ENST00000609524 467 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 XIST_intron.1-201ENST00000619444 68 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC090971.5-201ENST00000621102 293 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC091953.5-201ENST00000622919 233 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
HOXD3P31249 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXD3P31249 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD3P31249 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 AC091152.2-201ENST00000591628 2569 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 RNA5SP119-201ENST00000362715 117 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 RNU6-1188P-201ENST00000363795 107 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 Y_RNA.482-201ENST00000384377 111 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 RNU6-601P-201ENST00000384540 107 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 RNU6-95P-201ENST00000384697 107 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 MTHFD2P2-201ENST00000407725 247 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 RNU6-1025P-201ENST00000410629 104 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AL592148.1-201ENST00000413568 445 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD3P31249 AL353621.1-201ENST00000418219 243 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AL356867.1-201ENST00000429623 299 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 HMGN2P31-201ENST00000432430 273 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 SETP5-201ENST00000437270 562 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 HIGD1AP11-201ENST00000438361 280 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 RPL30P15-201ENST00000457129 321 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD3P31249 U3.44-201ENST00000458938 192 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC096576.1-201ENST00000489014 359 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 RPL31P61-201ENST00000496160 376 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
HOXD3P31249 HMGN1P11-201ENST00000508668 303 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD3P31249 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.98□□□□□ -1.93
HOXD3P31249 AC026403.1-201ENST00000518938 295 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC087854.1-201ENST00000519706 414 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC025755.1-201ENST00000521306 278 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AP003122.3-201ENST00000526316 255 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC084851.1-201ENST00000529105 249 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 IMMP1LP2-201ENST00000552954 492 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 HMGB1P14-201ENST00000557424 591 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD3P31249 AL080274.1-201ENST00000605565 220 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 Y_RNA.812-201ENST00000610788 101 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 Y_RNA.784-201ENST00000613803 101 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 MIR8058-201ENST00000615737 89 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 Y_RNA.787-201ENST00000616522 101 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 Y_RNA.780-201ENST00000617336 101 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 Y_RNA.801-201ENST00000619005 101 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD3P31249 MTCO1P12-201ENST00000414273 1543 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD3P31249 NCAPGP1-201ENST00000505112 1814 ntBASIC2.98□□□□□ -1.93
HOXD3P31249 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD3P31249 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD3P31249 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD3P31249 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD3P31249 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD3P31249 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 RNU6-384P-201ENST00000364900 104 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 Y_RNA.324-201ENST00000365165 102 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD3P31249 U1.1-201ENST00000384101 164 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 MIR301A-201ENST00000385261 86 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AL360182.1-201ENST00000397433 468 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 RPL21P17-201ENST00000397467 475 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AL590004.1-201ENST00000405321 300 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 SNORA3.3-201ENST00000408712 125 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 U3.42-201ENST00000408746 214 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD3P31249 RPS29P4-201ENST00000414733 161 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD3P31249 RPL31P12-201ENST00000422587 358 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD3P31249 AC092573.2-201ENST00000434546 243 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms