Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC073901.1-201ENST00000462471 408 ntBASIC2.54□□□□□ -2
PTPN4P29074 RPL39P36-201ENST00000490784 156 ntBASIC2.54□□□□□ -2
PTPN4P29074 SNORD19.2-201ENST00000516978 73 ntBASIC2.54□□□□□ -2
PTPN4P29074 RNA5SP165-201ENST00000517142 115 ntBASIC2.54□□□□□ -2
PTPN4P29074 AP003467.2-201ENST00000520175 319 ntBASIC2.54□□□□□ -2
PTPN4P29074 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.54□□□□□ -2
PTPN4P29074 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.54□□□□□ -2
PTPN4P29074 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.54□□□□□ -2
PTPN4P29074 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.54□□□□□ -2
PTPN4P29074 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.54□□□□□ -2
PTPN4P29074 DPPA3P3-201ENST00000603842 430 ntBASIC2.54□□□□□ -2
PTPN4P29074 AL049779.4-201ENST00000604500 156 ntBASIC2.54□□□□□ -2
PTPN4P29074 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.54□□□□□ -2
PTPN4P29074 AC011939.3-201ENST00000613686 466 ntBASIC2.54□□□□□ -2
PTPN4P29074 MIR6817-201ENST00000615588 66 ntBASIC2.54□□□□□ -2
PTPN4P29074 AC243829.7-201ENST00000633081 225 ntBASIC2.54□□□□□ -2
PTPN4P29074 MIR3199-2-201ENST00000636243 86 ntBASIC2.54□□□□□ -2
PTPN4P29074 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PTPN4P29074 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.54□□□□□ -2
PTPN4P29074 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
PTPN4P29074 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PTPN4P29074 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PTPN4P29074 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
PTPN4P29074 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
PTPN4P29074 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
PTPN4P29074 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
PTPN4P29074 HSPE1P11-201ENST00000339579 310 ntBASIC2.53□□□□□ -2
PTPN4P29074 U3.4-201ENST00000363352 213 ntBASIC2.53□□□□□ -2
PTPN4P29074 SNORA80E-201ENST00000384744 137 ntBASIC2.53□□□□□ -2
PTPN4P29074 MIR301A-201ENST00000385261 86 ntBASIC2.53□□□□□ -2
PTPN4P29074 Y_RNA.598-201ENST00000410480 95 ntBASIC2.53□□□□□ -2
PTPN4P29074 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.53□□□□□ -2
PTPN4P29074 BPY2DP-201ENST00000422208 265 ntBASIC2.53□□□□□ -2
PTPN4P29074 RPL36AP53-201ENST00000432891 316 ntBASIC2.53□□□□□ -2
PTPN4P29074 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.53□□□□□ -2
PTPN4P29074 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.53□□□□□ -2
PTPN4P29074 CECR9-201ENST00000453421 199 ntBASIC2.53□□□□□ -2
PTPN4P29074 AC233279.1-201ENST00000455300 423 ntBASIC2.53□□□□□ -2
PTPN4P29074 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.53□□□□□ -2
PTPN4P29074 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.53□□□□□ -2
PTPN4P29074 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.53□□□□□ -2
PTPN4P29074 RNU6-677P-201ENST00000516914 101 ntBASIC2.53□□□□□ -2
PTPN4P29074 RNU6-1092P-201ENST00000516955 87 ntBASIC2.53□□□□□ -2
PTPN4P29074 BTF3P12-201ENST00000519620 469 ntBASIC2.53□□□□□ -2
PTPN4P29074 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.53□□□□□ -2
PTPN4P29074 AP006587.4-201ENST00000526053 529 ntBASIC2.53□□□□□ -2
PTPN4P29074 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.53□□□□□ -2
PTPN4P29074 AC234778.2-201ENST00000566241 354 ntBASIC2.53□□□□□ -2
PTPN4P29074 AC007151.1-201ENST00000572774 483 ntBASIC2.53□□□□□ -2
PTPN4P29074 AC009977.1-201ENST00000586015 570 ntBASIC2.53□□□□□ -2
PTPN4P29074 HMGN1P30-201ENST00000589286 268 ntBASIC2.53□□□□□ -2
PTPN4P29074 BNIP3P9-201ENST00000603714 553 ntBASIC2.53□□□□□ -2
PTPN4P29074 AP000860.1-201ENST00000605250 559 ntBASIC2.53□□□□□ -2
PTPN4P29074 AC068276.1-201ENST00000605793 379 ntBASIC2.53□□□□□ -2
PTPN4P29074 AC073114.1-201ENST00000612027 490 ntBASIC2.53□□□□□ -2
PTPN4P29074 AL365204.3-201ENST00000612448 685 ntBASIC2.53□□□□□ -2
PTPN4P29074 AL603839.4-201ENST00000624658 1005 ntBASIC2.53□□□□□ -2
PTPN4P29074 FO624990.1-201ENST00000636373 85 ntBASIC2.53□□□□□ -2
PTPN4P29074 U2.21-201ENST00000637295 81 ntBASIC2.53□□□□□ -2
PTPN4P29074 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.53□□□□□ -2
PTPN4P29074 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
PTPN4P29074 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.53□□□□□ -2
PTPN4P29074 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
PTPN4P29074 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
PTPN4P29074 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.52□□□□□ -2.01
PTPN4P29074 AC004520.1-201ENST00000608362 1413 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 MTND4P27-201ENST00000450813 1354 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
PTPN4P29074 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
PTPN4P29074 FGF7P2-201ENST00000332473 296 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 RNU6-511P-201ENST00000363496 107 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 RNU4-1-201ENST00000363925 141 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 RNU6-960P-201ENST00000364056 120 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 RNU4-91P-201ENST00000364778 135 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 RNU6-701P-201ENST00000384059 107 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 RNY3P10-201ENST00000384764 102 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 U3.37-201ENST00000408528 213 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.52□□□□□ -2.01
PTPN4P29074 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.52□□□□□ -2.01
PTPN4P29074 AC010153.1-201ENST00000432862 727 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 AC119618.1-201ENST00000434191 222 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 PGBD4P3-201ENST00000440731 581 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.52□□□□□ -2.01
PTPN4P29074 RPS3P1-201ENST00000456781 192 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 RNA5SP269-201ENST00000459032 137 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.52□□□□□ -2.01
PTPN4P29074 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.52□□□□□ -2.01
PTPN4P29074 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.52□□□□□ -2.01
PTPN4P29074 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.52□□□□□ -2.01
PTPN4P29074 AC107222.1-201ENST00000510899 637 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.52□□□□□ -2.01
PTPN4P29074 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.52□□□□□ -2.01
PTPN4P29074 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.52□□□□□ -2.01
PTPN4P29074 RNU7-51P-201ENST00000516560 62 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.52□□□□□ -2.01
PTPN4P29074 RPL21P5-201ENST00000554662 472 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 AC023824.2-201ENST00000566185 400 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 AC009163.5-201ENST00000575421 637 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 MIR5194-201ENST00000582634 120 ntBASIC2.52□□□□□ -2.01
PTPN4P29074 AC103710.2-201ENST00000609912 942 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms