Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 U6.104-201ENST00000637979 90 ntBASIC4.79□□□□□ -1.64
LIG1P18858 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.79□□□□□ -1.64
LIG1P18858 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
LIG1P18858 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIG1P18858 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
LIG1P18858 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LIG1P18858 ZNF285B-201ENST00000561698 1767 ntBASIC4.78□□□□□ -1.64
LIG1P18858 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIG1P18858 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.78□□□□□ -1.64
LIG1P18858 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LIG1P18858 OR56A5-201ENST00000340110 738 ntBASIC4.78□□□□□ -1.64
LIG1P18858 Y_RNA.14-201ENST00000362415 103 ntBASIC4.78□□□□□ -1.64
LIG1P18858 Y_RNA.526-201ENST00000384572 110 ntBASIC4.78□□□□□ -1.64
LIG1P18858 Y_RNA.562-201ENST00000384695 113 ntBASIC4.78□□□□□ -1.64
LIG1P18858 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LIG1P18858 SNORA11F-201ENST00000408237 128 ntBASIC4.78□□□□□ -1.64
LIG1P18858 SNORA3C-201ENST00000408792 125 ntBASIC4.78□□□□□ -1.64
LIG1P18858 RNA5SP36-201ENST00000410197 133 ntBASIC4.78□□□□□ -1.64
LIG1P18858 RPL23AP26-201ENST00000412728 464 ntBASIC4.78□□□□□ -1.64
LIG1P18858 CYCSP33-201ENST00000414485 327 ntBASIC4.78□□□□□ -1.64
LIG1P18858 AL353621.1-201ENST00000418219 243 ntBASIC4.78□□□□□ -1.64
LIG1P18858 RPS15AP6-201ENST00000420703 385 ntBASIC4.78□□□□□ -1.64
LIG1P18858 ELOCP20-201ENST00000422460 345 ntBASIC4.78□□□□□ -1.64
LIG1P18858 AC091390.1-201ENST00000433904 331 ntBASIC4.78□□□□□ -1.64
LIG1P18858 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.78□□□□□ -1.64
LIG1P18858 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIG1P18858 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.78□□□□□ -1.64
LIG1P18858 AC010618.1-201ENST00000469924 477 ntBASIC4.78□□□□□ -1.64
LIG1P18858 RPL31P13-201ENST00000484151 370 ntBASIC4.78□□□□□ -1.64
LIG1P18858 AC069499.1-201ENST00000489433 509 ntBASIC4.78□□□□□ -1.64
LIG1P18858 RNU6-840P-201ENST00000517275 65 ntBASIC4.78□□□□□ -1.64
LIG1P18858 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LIG1P18858 CBX3P8-201ENST00000532412 525 ntBASIC4.78□□□□□ -1.64
LIG1P18858 TRAV8-5-201ENST00000537369 341 ntBASIC4.78□□□□□ -1.64
LIG1P18858 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
LIG1P18858 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.78□□□□□ -1.64
LIG1P18858 MIR3128-201ENST00000581957 66 ntBASIC4.78□□□□□ -1.64
LIG1P18858 MIR548AC-201ENST00000585049 88 ntBASIC4.78□□□□□ -1.64
LIG1P18858 VN1R91P-201ENST00000594377 169 ntBASIC4.78□□□□□ -1.64
LIG1P18858 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.78□□□□□ -1.64
LIG1P18858 BDH2P1-201ENST00000602288 736 ntBASIC4.78□□□□□ -1.64
LIG1P18858 AL355810.1-201ENST00000614629 552 ntBASIC4.78□□□□□ -1.64
LIG1P18858 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.78□□□□□ -1.64
LIG1P18858 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.78□□□□□ -1.64
LIG1P18858 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.78□□□□□ -1.64
LIG1P18858 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIG1P18858 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
LIG1P18858 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.78□□□□□ -1.64
LIG1P18858 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.78□□□□□ -1.64
LIG1P18858 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.65
LIG1P18858 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIG1P18858 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LIG1P18858 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.77□□□□□ -1.65
LIG1P18858 RNY1P16-201ENST00000363063 111 ntBASIC4.77□□□□□ -1.65
LIG1P18858 RNU1-132P-201ENST00000364300 164 ntBASIC4.77□□□□□ -1.65
LIG1P18858 RNU6-335P-201ENST00000364563 113 ntBASIC4.77□□□□□ -1.65
LIG1P18858 Y_RNA.376-201ENST00000365638 108 ntBASIC4.77□□□□□ -1.65
LIG1P18858 Y_RNA.483-201ENST00000384380 101 ntBASIC4.77□□□□□ -1.65
LIG1P18858 RNU6-790P-201ENST00000384479 105 ntBASIC4.77□□□□□ -1.65
LIG1P18858 Y_RNA.518-201ENST00000384552 113 ntBASIC4.77□□□□□ -1.65
LIG1P18858 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.77□□□□□ -1.65
LIG1P18858 AL353997.1-201ENST00000432936 108 ntBASIC4.77□□□□□ -1.65
LIG1P18858 RPS3AP12-201ENST00000443616 753 ntBASIC4.77□□□□□ -1.65
LIG1P18858 NUTF2P3-201ENST00000448540 384 ntBASIC4.77□□□□□ -1.65
LIG1P18858 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.77□□□□□ -1.65
LIG1P18858 AC105137.1-201ENST00000484355 562 ntBASIC4.77□□□□□ -1.65
LIG1P18858 MTND1P19-201ENST00000511780 315 ntBASIC4.77□□□□□ -1.65
LIG1P18858 AC108043.1-201ENST00000512696 574 ntBASIC4.77□□□□□ -1.65
LIG1P18858 ACA59.1-201ENST00000515966 143 ntBASIC4.77□□□□□ -1.65
LIG1P18858 CYCSP29-201ENST00000533731 318 ntBASIC4.77□□□□□ -1.65
LIG1P18858 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG1P18858 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG1P18858 AC007375.1-201ENST00000554513 578 ntBASIC4.77□□□□□ -1.65
LIG1P18858 ZNF192P1-203ENST00000565888 810 ntBASIC4.77□□□□□ -1.65
LIG1P18858 MIR4273-201ENST00000582824 84 ntBASIC4.77□□□□□ -1.65
LIG1P18858 MIR7702-201ENST00000621931 59 ntBASIC4.77□□□□□ -1.65
LIG1P18858 ZNF72P-201ENST00000425869 1908 ntBASIC4.77□□□□□ -1.65
LIG1P18858 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
LIG1P18858 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIG1P18858 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG1P18858 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.76□□□□□ -1.65
LIG1P18858 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
LIG1P18858 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.76□□□□□ -1.65
LIG1P18858 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
LIG1P18858 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
LIG1P18858 AC068538.1-201ENST00000376856 336 ntBASIC4.76□□□□□ -1.65
LIG1P18858 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
LIG1P18858 RNU6-882P-201ENST00000391025 103 ntBASIC4.76□□□□□ -1.65
LIG1P18858 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.76□□□□□ -1.65
LIG1P18858 AC011742.1-201ENST00000431448 434 ntBASIC4.76□□□□□ -1.65
LIG1P18858 MTND2P29-201ENST00000438595 412 ntBASIC4.76□□□□□ -1.65
LIG1P18858 RPL23AP81-201ENST00000455252 467 ntBASIC4.76□□□□□ -1.65
LIG1P18858 RPS29P19-201ENST00000479709 171 ntBASIC4.76□□□□□ -1.65
LIG1P18858 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.76□□□□□ -1.65
LIG1P18858 RPL31P61-201ENST00000496160 376 ntBASIC4.76□□□□□ -1.65
LIG1P18858 AC008716.1-201ENST00000511084 513 ntBASIC4.76□□□□□ -1.65
LIG1P18858 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.76□□□□□ -1.65
LIG1P18858 RN7SKP122-201ENST00000515923 296 ntBASIC4.76□□□□□ -1.65
LIG1P18858 AC008489.1-201ENST00000524271 483 ntBASIC4.76□□□□□ -1.65
LIG1P18858 AC126177.3-201ENST00000551839 688 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms