Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL133384.1-201ENST00000412744 351 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC0.45□□□□□ -2.34
COL6A3P12111 HMGN2P21-201ENST00000447764 270 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC0.45□□□□□ -2.34
COL6A3P12111 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC0.45□□□□□ -2.34
COL6A3P12111 AC027575.1-201ENST00000481064 460 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 AC023050.1-201ENST00000498198 304 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
COL6A3P12111 AL121839.1-201ENST00000556233 1185 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 VN1R84P-201ENST00000593697 235 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 AC110079.1-202ENST00000635213 138 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 CD24P4-201ENST00000382840 243 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 MIR32-201ENST00000384965 70 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 MTCO2P8-201ENST00000412213 658 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 EIF1P1-201ENST00000421436 341 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.45□□□□□ -2.34
COL6A3P12111 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC0.45□□□□□ -2.34
COL6A3P12111 AL590365.1-201ENST00000450788 243 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 HMGN2P16-201ENST00000456802 261 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC0.45□□□□□ -2.34
COL6A3P12111 RNA5SP468-201ENST00000516782 93 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 OR8K2P-201ENST00000524645 927 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 MIR4305-201ENST00000583252 102 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 RNU6-1097P-201ENST00000363586 107 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 RNU4-7P-201ENST00000364758 141 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 RNU6-1187P-201ENST00000364771 110 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 RNU2-71P-201ENST00000411395 189 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 RPS26P42-201ENST00000413485 326 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 Z80107.1-201ENST00000436830 412 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.45□□□□□ -2.34
COL6A3P12111 AL135752.1-201ENST00000479477 471 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 RNA5SP180-201ENST00000516181 101 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 AL355816.1-201ENST00000607951 118 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 AP003122.6-201ENST00000623831 495 ntBASIC0.45□□□□□ -2.34
COL6A3P12111 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.45□□□□□ -2.34
COL6A3P12111 ZNF204P-201ENST00000416749 2397 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 RNA5SP93-201ENST00000362525 114 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 MIR515-2-201ENST00000384883 83 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 MIR515-1-201ENST00000384884 83 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 CIR1P3-201ENST00000405137 479 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC0.44□□□□□ -2.34
COL6A3P12111 AL358794.1-201ENST00000445689 381 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 AC010683.1-201ENST00000473673 378 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 RNU6-138P-201ENST00000515952 107 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 uc_338.6-201ENST00000613544 171 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC0.44□□□□□ -2.34
COL6A3P12111 MIR6076-201ENST00000617521 113 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 AC109454.4-201ENST00000623411 649 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 MIR26B-201ENST00000362251 77 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 SNORA22-201ENST00000383907 134 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 SNORA22C-201ENST00000384614 134 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 RNU6-939P-201ENST00000384634 107 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 RNU6-370P-201ENST00000411008 104 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 Y_RNA.630-201ENST00000411370 108 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 SFR1P2-201ENST00000421841 730 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 HMGN2P30-201ENST00000423237 256 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 HMGN2P22-201ENST00000427588 175 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 CBX3P3-201ENST00000508108 532 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 MTCO2P32-201ENST00000514865 403 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC0.44□□□□□ -2.34
COL6A3P12111 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC0.44□□□□□ -2.34
COL6A3P12111 AC008945.2-201ENST00000606056 604 ntBASIC0.44□□□□□ -2.34
COL6A3P12111 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
COL6A3P12111 MIR635-201ENST00000384830 98 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC244098.2-201ENST00000422068 99 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 RNU6-1218P-201ENST00000458990 108 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC010301.1-201ENST00000473936 355 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC0.43□□□□□ -2.34
COL6A3P12111 MIR3690-201ENST00000580266 75 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 MIR4658-201ENST00000584344 65 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC008121.1-201ENST00000603244 268 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 MIR92A2-201ENST00000385299 75 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 RNA5SP222-201ENST00000411039 105 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AL512844.2-201ENST00000433990 593 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 SSXP4-201ENST00000451349 245 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC097493.1-201ENST00000463958 372 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
COL6A3P12111 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC0.43□□□□□ -2.34
COL6A3P12111 RPF2P2-201ENST00000504693 896 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC023050.3-201ENST00000541142 333 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 COX6CP3-201ENST00000580869 223 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC005332.10-201ENST00000612725 619 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC0.43□□□□□ -2.34
COL6A3P12111 ZNF663P-202ENST00000641770 1131 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 MTND5P16-201ENST00000460269 1703 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
COL6A3P12111 Y_RNA.172-201ENST00000363765 102 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 CCNG1P1-201ENST00000406783 885 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC0.43□□□□□ -2.34
COL6A3P12111 BTF3P11-201ENST00000426582 477 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AL353898.1-201ENST00000444055 238 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.43□□□□□ -2.34
COL6A3P12111 AC087884.1-201ENST00000469738 328 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
COL6A3P12111 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.43□□□□□ -2.34
COL6A3P12111 AC106791.2-201ENST00000604680 391 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC0.43□□□□□ -2.34
COL6A3P12111 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC0.43□□□□□ -2.34
COL6A3P12111 ZNF519P1-201ENST00000449011 1626 ntBASIC0.43□□□□□ -2.34
COL6A3P12111 RNU6-1197P-201ENST00000391183 107 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms