Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 KPNA2P1-201ENST00000458289 1591 ntBASIC3.98□□□□□ -1.77
CBX4O00257 MTND5P10-201ENST00000603719 1809 ntBASIC3.98□□□□□ -1.77
CBX4O00257 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CBX4O00257 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CBX4O00257 FTLP6-201ENST00000355274 422 ntBASIC3.98□□□□□ -1.77
CBX4O00257 Y_RNA.128-201ENST00000363391 112 ntBASIC3.98□□□□□ -1.77
CBX4O00257 RNU6-217P-201ENST00000384164 104 ntBASIC3.98□□□□□ -1.77
CBX4O00257 MIR30B-201ENST00000384850 88 ntBASIC3.98□□□□□ -1.77
CBX4O00257 MIR449B-201ENST00000384995 97 ntBASIC3.98□□□□□ -1.77
CBX4O00257 SNORD73A-201ENST00000386062 65 ntBASIC3.98□□□□□ -1.77
CBX4O00257 snosnR66.1-201ENST00000391095 99 ntBASIC3.98□□□□□ -1.77
CBX4O00257 SNORA75.4-201ENST00000391278 119 ntBASIC3.98□□□□□ -1.77
CBX4O00257 AL096701.2-201ENST00000416920 238 ntBASIC3.98□□□□□ -1.77
CBX4O00257 PGBD4P6-201ENST00000421501 610 ntBASIC3.98□□□□□ -1.77
CBX4O00257 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.98□□□□□ -1.77
CBX4O00257 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.98□□□□□ -1.77
CBX4O00257 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.98□□□□□ -1.77
CBX4O00257 MTCYBP6-201ENST00000441810 138 ntBASIC3.98□□□□□ -1.77
CBX4O00257 NOTCH2P1-201ENST00000443481 624 ntBASIC3.98□□□□□ -1.77
CBX4O00257 MRPS31P2-201ENST00000451581 518 ntBASIC3.98□□□□□ -1.77
CBX4O00257 Y_RNA.639-201ENST00000458981 102 ntBASIC3.98□□□□□ -1.77
CBX4O00257 RPL31P61-201ENST00000496160 376 ntBASIC3.98□□□□□ -1.77
CBX4O00257 HMGN1P11-201ENST00000508668 303 ntBASIC3.98□□□□□ -1.77
CBX4O00257 MTCYBP40-201ENST00000509390 1135 ntBASIC3.98□□□□□ -1.77
CBX4O00257 AC093303.1-201ENST00000514549 295 ntBASIC3.98□□□□□ -1.77
CBX4O00257 SCARNA15.1-201ENST00000516384 125 ntBASIC3.98□□□□□ -1.77
CBX4O00257 RNA5SP309-201ENST00000516670 106 ntBASIC3.98□□□□□ -1.77
CBX4O00257 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.98□□□□□ -1.77
CBX4O00257 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.98□□□□□ -1.77
CBX4O00257 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.98□□□□□ -1.77
CBX4O00257 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.98□□□□□ -1.77
CBX4O00257 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.98□□□□□ -1.77
CBX4O00257 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.98□□□□□ -1.77
CBX4O00257 AL161423.1-201ENST00000613700 262 ntBASIC3.98□□□□□ -1.77
CBX4O00257 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.98□□□□□ -1.77
CBX4O00257 MIR4727-201ENST00000622232 55 ntBASIC3.98□□□□□ -1.77
CBX4O00257 FP236240.3-201ENST00000623061 327 ntBASIC3.98□□□□□ -1.77
CBX4O00257 AL669831.3-213ENST00000636676 183 ntBASIC3.98□□□□□ -1.77
CBX4O00257 U6.99-201ENST00000637524 83 ntBASIC3.98□□□□□ -1.77
CBX4O00257 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CBX4O00257 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.98□□□□□ -1.77
CBX4O00257 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
CBX4O00257 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.98□□□□□ -1.77
CBX4O00257 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CBX4O00257 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.98□□□□□ -1.77
CBX4O00257 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CBX4O00257 CUL1P1-201ENST00000509510 2425 ntBASIC3.97□□□□□ -1.77
CBX4O00257 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
CBX4O00257 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CBX4O00257 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CBX4O00257 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CBX4O00257 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CBX4O00257 MTCO1P12-201ENST00000414273 1543 ntBASIC3.97□□□□□ -1.77
CBX4O00257 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CBX4O00257 MIR369-201ENST00000362155 70 ntBASIC3.97□□□□□ -1.77
CBX4O00257 SNORD42.2-201ENST00000365570 69 ntBASIC3.97□□□□□ -1.77
CBX4O00257 RNU6-328P-201ENST00000390887 106 ntBASIC3.97□□□□□ -1.77
CBX4O00257 MIR548P-201ENST00000408336 84 ntBASIC3.97□□□□□ -1.77
CBX4O00257 RN7SKP53-201ENST00000411337 315 ntBASIC3.97□□□□□ -1.77
CBX4O00257 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.97□□□□□ -1.77
CBX4O00257 HIGD1AP11-201ENST00000438361 280 ntBASIC3.97□□□□□ -1.77
CBX4O00257 RPL12P25-201ENST00000455592 494 ntBASIC3.97□□□□□ -1.77
CBX4O00257 ELOCP24-201ENST00000456370 334 ntBASIC3.97□□□□□ -1.77
CBX4O00257 AC092798.1-201ENST00000458542 409 ntBASIC3.97□□□□□ -1.77
CBX4O00257 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CBX4O00257 CYCSP30-201ENST00000546447 172 ntBASIC3.97□□□□□ -1.77
CBX4O00257 AC018462.2-201ENST00000605375 395 ntBASIC3.97□□□□□ -1.77
CBX4O00257 AC123912.5-201ENST00000605470 343 ntBASIC3.97□□□□□ -1.77
CBX4O00257 AL080274.1-201ENST00000605565 220 ntBASIC3.97□□□□□ -1.77
CBX4O00257 AC019193.3-201ENST00000609144 554 ntBASIC3.97□□□□□ -1.77
CBX4O00257 FTX_3.1-201ENST00000610451 147 ntBASIC3.97□□□□□ -1.77
CBX4O00257 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CBX4O00257 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CBX4O00257 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CBX4O00257 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.96□□□□□ -1.77
CBX4O00257 MAPK10-253ENST00000641010 4072 ntBASIC3.96□□□□□ -1.77
CBX4O00257 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.96□□□□□ -1.77
CBX4O00257 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.96□□□□□ -1.77
CBX4O00257 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CBX4O00257 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-37P-201ENST00000362692 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-11P-201ENST00000364234 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-7-201ENST00000364784 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 Y_RNA.326-201ENST00000365176 113 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-8-201ENST00000365467 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-25P-201ENST00000383873 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-1-201ENST00000383898 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-48P-201ENST00000384161 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-36P-201ENST00000384172 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-4P-201ENST00000384205 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-5P-201ENST00000384238 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-3P-201ENST00000384314 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-166P-201ENST00000384371 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-16P-201ENST00000384385 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-15P-201ENST00000384534 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-306P-201ENST00000384617 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-2-201ENST00000384627 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-29P-201ENST00000384637 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-9-201ENST00000384776 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-33P-201ENST00000384793 107 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms