Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 AC004967.1-201ENST00000453589 447 ntBASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 MIR3917-201ENST00000580971 93 ntBASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 PRKN-208ENST00000610470 531 ntTSL 2 BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 PRKN-209ENST00000612485 225 ntTSL 5 BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 MIR7706-201ENST00000613747 67 ntBASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.2
SMC1BQ8NDV3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SMC1BQ8NDV3 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 NSUN5P1-202ENST00000421140 1535 ntBASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 NSUN5P2-203ENST00000457352 1529 ntBASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 LINC00565-201ENST00000562710 2331 ntBASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC22.57■■□□□ 1.2
SMC1BQ8NDV3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 MIR3687-2-201ENST00000577708 61 ntBASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 AL049840.3-201ENST00000602669 611 ntBASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 MIR3687-1-201ENST00000614492 61 ntBASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
SMC1BQ8NDV3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 AC036111.1-201ENST00000533973 1582 ntBASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 AC018712.1-201ENST00000455767 687 ntBASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 VENTXP7-201ENST00000475503 772 ntBASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 AC027601.4-201ENST00000611259 610 ntBASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC22.55■■□□□ 1.2
SMC1BQ8NDV3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 EMD-201ENST00000369835 966 ntTSL 3 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC22.54■■□□□ 1.2
SMC1BQ8NDV3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms