Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
PCDHA3Q9Y5H8 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.81
PCDHA3Q9Y5H8 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
PCDHA3Q9Y5H8 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RN7SKP280-201ENST00000364196 304 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 MIR325-201ENST00000385260 98 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 MIR450B-201ENST00000401182 78 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-1025P-201ENST00000410629 104 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 MYL8P-204ENST00000431574 518 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AL512844.2-201ENST00000433990 593 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 SNRPEP9-201ENST00000436794 238 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AL357552.1-201ENST00000445254 415 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RPS3AP46-201ENST00000448352 682 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RPS4XP2-201ENST00000458402 793 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RPS23P3-201ENST00000470993 430 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RN7SKP13-201ENST00000515933 244 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-277P-201ENST00000516272 106 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 MIR2276-201ENST00000516886 89 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RNA5SP165-201ENST00000517142 115 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 TRAV37-201ENST00000553906 342 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC023043.2-201ENST00000589678 1026 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC004805.2-201ENST00000605382 482 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 uc_338.15-201ENST00000615470 191 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 RMST_4.1-201ENST00000616886 107 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC027309.3-201ENST00000623419 351 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 AC002546.1-201ENST00000588041 2504 ntBASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
PCDHA3Q9Y5H8 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 ZNF807-201ENST00000328088 1707 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 MIR412-201ENST00000362142 91 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-217P-201ENST00000384164 104 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 Y_RNA.474-201ENST00000384341 102 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 Y_RNA.535-201ENST00000384612 99 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-1179P-201ENST00000384667 107 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 PTMAP5-201ENST00000393073 333 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 SNORA11-201ENST00000408789 128 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RNU2-3P-201ENST00000410144 191 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RNU2-68P-201ENST00000410878 191 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RN7SKP53-201ENST00000411337 315 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 CYCSP33-201ENST00000414485 327 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 VN1R36P-201ENST00000414936 291 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 TMEM167AP1-201ENST00000423409 219 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 AP000907.1-201ENST00000428428 510 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 AC092573.2-201ENST00000434546 243 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 NDUFB1P2-201ENST00000449477 176 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 AC087884.1-201ENST00000469738 328 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 AC117503.1-201ENST00000472241 394 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RPL21P13-201ENST00000488305 481 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 TBCAP3-201ENST00000512475 312 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-1088P-201ENST00000516850 104 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 AC009902.1-201ENST00000519351 183 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 MIR4795-201ENST00000584182 89 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 FAM157A-202ENST00000615155 405 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 AP003355.3-201ENST00000623465 114 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
PCDHA3Q9Y5H8 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 MFSD8-233ENST00000641482 4860 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 MFSD8-236ENST00000641509 4050 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 CUL1P1-201ENST00000509510 2425 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-1252P-201ENST00000363054 104 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 Y_RNA.135-201ENST00000363439 95 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-266P-201ENST00000364225 107 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RNU4-76P-201ENST00000364509 141 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 Y_RNA.339-201ENST00000365325 102 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-128P-201ENST00000383976 107 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 SNORA75B-201ENST00000384053 137 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-140P-201ENST00000384566 108 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RN7SKP27-201ENST00000410684 333 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RNA5SP31-201ENST00000411144 127 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms