Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AC012119.1-201ENST00000603184 222 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AL121992.2-201ENST00000606262 256 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 MIR98-201ENST00000606724 119 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AC107294.1-201ENST00000609524 467 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AL161734.1-201ENST00000609720 557 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AC008498.1-201ENST00000613012 531 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AC130324.3-201ENST00000614165 542 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC073343.1-201ENST00000328239 651 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 RNU6-884P-201ENST00000363889 107 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 RNU2-25P-201ENST00000411041 191 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 RNA5SP184-201ENST00000411071 108 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC114491.1-201ENST00000416095 246 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AL592045.1-201ENST00000429867 352 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 MTND4P25-201ENST00000441039 533 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 RPS15AP27-201ENST00000449183 343 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 RPS29P20-201ENST00000489592 171 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 RPL39P36-201ENST00000490784 156 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC022634.1-201ENST00000520765 532 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC025281.1-201ENST00000567026 265 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC024619.4-201ENST00000580924 316 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC245014.2-201ENST00000603689 287 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC246785.4-201ENST00000605374 287 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 AC099842.1-201ENST00000619919 596 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 U2.21-201ENST00000637295 81 ntBASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CPSF3Q9UKF6 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
CPSF3Q9UKF6 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
CPSF3Q9UKF6 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
CPSF3Q9UKF6 AL359693.1-201ENST00000614959 2407 ntBASIC2.9□□□□□ -1.94
CPSF3Q9UKF6 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.94
CPSF3Q9UKF6 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
CPSF3Q9UKF6 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
CPSF3Q9UKF6 Y_RNA.111-201ENST00000363248 100 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RNU6-1180P-201ENST00000364935 107 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RNU6-282P-201ENST00000365357 103 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RNU6-1119P-201ENST00000384349 108 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RPL21P75-201ENST00000396599 483 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL512633.1-201ENST00000399931 655 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RPL21P28-201ENST00000401418 483 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL592114.1-201ENST00000403842 483 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL513475.1-201ENST00000406602 315 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RNU2-39P-201ENST00000410604 198 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC016907.1-201ENST00000419483 435 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 GTF2IP20-201ENST00000431663 360 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL591212.2-201ENST00000433923 257 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RPL39P40-201ENST00000445481 146 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL109933.2-201ENST00000452651 260 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RNU6-953P-201ENST00000459154 107 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RPL37P6-201ENST00000460682 294 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RPL21P39-201ENST00000463605 483 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RPL21P93-201ENST00000480465 489 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC103975.1-201ENST00000482506 483 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC087190.1-201ENST00000484462 480 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC093591.1-201ENST00000491435 481 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RPL21P16-201ENST00000495531 483 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 RNU6-677P-201ENST00000516914 101 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AP003072.2-201ENST00000527756 676 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 HMGN2P15-201ENST00000585707 270 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 MTND4LP5-201ENST00000605152 292 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AC022893.3-201ENST00000607665 437 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL359198.2-201ENST00000611836 194 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 AL589743.7-201ENST00000612637 233 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 CR381653.2-201ENST00000624041 768 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 SCARNA15.3-201ENST00000626315 122 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 SCARNA4.1-201ENST00000628597 123 ntBASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.95
CPSF3Q9UKF6 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 RNU6-859P-201ENST00000362728 107 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 RNU6-190P-201ENST00000384154 102 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 Y_RNA.534-201ENST00000384599 112 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 MIR34A-201ENST00000385130 110 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 RNU2-68P-201ENST00000410878 191 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 180.8 ms