Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 GMPSP1-201ENST00000514075 579 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 RNU1-61P-201ENST00000516107 151 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 RNA5SP503-201ENST00000517047 117 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC093331.1-201ENST00000521474 169 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 MED28P6-201ENST00000558776 231 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC011471.1-201ENST00000585766 187 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 NRBF2P5-201ENST00000603087 788 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC135507.2-201ENST00000612443 309 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC092794.2-201ENST00000620933 563 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC011155.2-201ENST00000623202 216 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AC009033.1-201ENST00000624279 431 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AL354685.2-201ENST00000448218 1447 ntBASIC3.15□□□□□ -1.91
SIX4Q9UIU6 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
SIX4Q9UIU6 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 RNU6-50P-201ENST00000362356 103 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 RNU5A-1-201ENST00000362698 116 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 SNORD115-7-201ENST00000365306 82 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 Y_RNA.576-201ENST00000384781 102 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 SNORA48.8-201ENST00000391324 134 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 RPL21P3-201ENST00000395517 478 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 EEF1A1P41-201ENST00000414667 207 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC091390.3-201ENST00000426478 338 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 CALM1P1-201ENST00000442082 433 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 SSXP4-201ENST00000451349 245 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 RPL23AP31-201ENST00000456160 467 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC146507.2-201ENST00000460608 476 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC018710.1-201ENST00000506509 158 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC105417.1-201ENST00000514691 285 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AF235103.2-201ENST00000525753 346 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 EIF4BP1-201ENST00000554881 351 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 MIR4703-201ENST00000577728 79 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC010525.2-201ENST00000590920 195 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 DISC2.1-201ENST00000612827 205 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AL390240.1-201ENST00000612950 384 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AC093831.2-201ENST00000624393 3427 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SIX4Q9UIU6 ASNSP3-201ENST00000451989 1306 ntBASIC3.14□□□□□ -1.91
SIX4Q9UIU6 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 NACAP2-201ENST00000318548 624 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RNU6-552P-201ENST00000362869 119 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 Y_RNA.160-201ENST00000363677 92 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RNU4-20P-201ENST00000365601 151 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 DEFB109C-201ENST00000382575 264 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 DEFB109B-201ENST00000382656 264 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RNU6-903P-201ENST00000391270 109 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RNA5SP129-201ENST00000410276 118 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RPL36AP53-201ENST00000432891 316 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 MTND4P25-201ENST00000441039 533 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 NEFMP1-201ENST00000443423 1006 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 MTND1P18-201ENST00000448191 573 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RPL21P41-201ENST00000459863 264 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC025465.4-201ENST00000513422 638 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 RN7SKP43-201ENST00000516173 320 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AL138976.2-201ENST00000563989 694 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC005730.3-201ENST00000583067 366 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AC099778.2-201ENST00000610904 211 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 AL355810.1-201ENST00000614629 552 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 U6.114-201ENST00000636407 96 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms