Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RN7SL499P-201ENST00000481141 276 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC087190.1-201ENST00000484462 480 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RPS15AP34-201ENST00000487776 387 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC093591.1-201ENST00000491435 481 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RPL21P16-201ENST00000495531 483 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 HMGB1P41-201ENST00000520234 440 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AP000889.1-201ENST00000530968 660 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC021739.1-201ENST00000559631 174 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC131902.3-201ENST00000611767 581 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC108479.2-201ENST00000617314 601 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AL512643.1-201ENST00000635735 524 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 MIR7515-201ENST00000637837 67 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 ADAM3A-203ENST00000461344 2157 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC069528.2-201ENST00000624849 1991 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC016717.2-201ENST00000609089 5141 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 SET-203ENST00000372688 801 ntTSL 2 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 RNU6-190P-201ENST00000384154 102 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 RPL23AP32-201ENST00000395315 459 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 BRK1P2-201ENST00000442875 223 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 HMGN2P10-201ENST00000448085 265 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 RPS27AP8-201ENST00000452665 445 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC007182.2-201ENST00000489251 402 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC022447.1-201ENST00000515358 464 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 SCARNA17.1-201ENST00000516211 143 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 SCARNA17.2-201ENST00000516334 143 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 SCARNA11.3-201ENST00000517276 130 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AP003122.3-201ENST00000526316 255 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 COX6CP5-201ENST00000527162 228 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AP001646.1-201ENST00000527936 915 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC084851.1-201ENST00000529105 249 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 MTCO3P13-201ENST00000577757 781 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC024619.4-201ENST00000580924 316 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 OR1M4P-201ENST00000589199 287 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC130324.3-201ENST00000614165 542 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 SCARNA17.4-201ENST00000614296 143 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC008147.4-201ENST00000617570 1204 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC025048.6-202ENST00000627667 438 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 CTSLP2-204ENST00000629029 392 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 U6.99-201ENST00000637524 83 ntBASIC2.47□□□□□ -2.01
LHX3Q9UBR4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
LHX3Q9UBR4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 RNY1P12-201ENST00000364251 105 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 Y_RNA.534-201ENST00000384599 112 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AL513475.1-201ENST00000406602 315 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 RNA5SP492-201ENST00000411330 114 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AL591704.1-201ENST00000432574 275 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 PGBD4P3-201ENST00000440731 581 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 MTND6P13-201ENST00000443510 523 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 SNRPGP9-201ENST00000456025 225 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AC107626.1-201ENST00000471084 183 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 RPS27AP9-201ENST00000477681 438 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 RPL23AP94-201ENST00000512518 302 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AC118465.1-201ENST00000513820 1271 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.46□□□□□ -2.02
LHX3Q9UBR4 RNU5F-8P-201ENST00000515941 111 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 Y_RNA.689-201ENST00000516589 107 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 RNU6-914P-201ENST00000516749 109 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 SNORD19.2-201ENST00000516978 73 ntBASIC2.46□□□□□ -2.02
LHX3Q9UBR4 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms