Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 RNA5SP267-201ENST00000364893 126 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 Y_RNA.402-201ENST00000383972 102 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 MIR578-201ENST00000384828 96 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AL356057.2-201ENST00000403318 432 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AL606923.1-201ENST00000406616 190 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 RNU6-648P-201ENST00000410190 107 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 RN7SKP111-201ENST00000410349 271 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 RNA5SP293-201ENST00000410527 113 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 NDUFS5P4-201ENST00000412983 318 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 RPL26P27-201ENST00000414397 437 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AL356968.1-201ENST00000416622 474 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 MTCO1P20-201ENST00000425366 358 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC005300.1-201ENST00000428401 373 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 RNU7-23P-201ENST00000459465 62 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 RN7SL601P-201ENST00000471221 293 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC009901.1-201ENST00000506703 541 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC114786.4-201ENST00000508771 728 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 SNORA70.24-201ENST00000517233 118 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 PSMA2P1-201ENST00000526365 646 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC015917.1-201ENST00000579654 510 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 BNIP3P30-201ENST00000601184 574 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AL162413.1-201ENST00000603198 110 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC096577.2-201ENST00000611455 153 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC090517.2-201ENST00000614966 680 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AC010338.1-201ENST00000621823 717 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 U2.21-201ENST00000637295 81 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AL354685.2-201ENST00000448218 1447 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 AL356274.2-201ENST00000624379 3752 ntBASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
HCN3Q9P1Z3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
HCN3Q9P1Z3 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HCN3Q9P1Z3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 Z83843.1-201ENST00000604070 3685 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 RNU6-715P-201ENST00000365204 103 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC098614.2-201ENST00000426040 255 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 RPL21P40-201ENST00000428586 483 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC005326.1-201ENST00000429197 123 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 UBE2V1P8-201ENST00000437166 265 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 RPS4XP2-201ENST00000458402 793 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 CENPBD1P1-201ENST00000464061 469 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC128713.1-201ENST00000471495 306 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC022493.1-201ENST00000492984 337 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 RPS27AP10-201ENST00000496103 208 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 MTND4LP22-201ENST00000508209 276 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 MTND1P35-201ENST00000526739 508 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 BNIP3P6-201ENST00000549284 499 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 TRAV37-201ENST00000553906 342 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 MIR4782-201ENST00000577987 79 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC007938.3-201ENST00000604965 623 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 YWHAEP7-203ENST00000622054 312 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AP003122.6-201ENST00000623831 495 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 ASNSP3-201ENST00000451989 1306 ntBASIC3.15□□□□□ -1.91
HCN3Q9P1Z3 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 MIR30E-201ENST00000362104 92 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 Y_RNA.450-201ENST00000384198 113 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 GTF2IP20-201ENST00000431663 360 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 SEPT14P3-201ENST00000439401 183 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 BRK1P2-201ENST00000442875 223 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AL732372.2-207ENST00000445840 183 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 SEPT14P2-201ENST00000453405 183 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AL583843.1-201ENST00000456070 346 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 SCARNA18-201ENST00000459004 134 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AL121769.1-201ENST00000469473 401 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AC092989.1-201ENST00000481235 277 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 RPL21P13-201ENST00000488305 481 ntBASIC3.14□□□□□ -1.91
HCN3Q9P1Z3 AC092185.1-201ENST00000491371 97 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms