Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL583856.2-201ENST00000606298 543 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC069294.1-201ENST00000608397 350 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC009268.2-201ENST00000621925 457 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC008443.7-201ENST00000622195 246 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC087821.2-201ENST00000637086 450 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 MTND4P21-201ENST00000453886 1357 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 MIR96-201ENST00000362288 78 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNU6-492P-201ENST00000363035 104 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 SUGT1P1-201ENST00000379514 476 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNU6-203P-201ENST00000384038 104 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNU6-750P-201ENST00000390946 107 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 SNORA40C-201ENST00000391285 128 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AL158050.1-201ENST00000416077 457 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 CYCSP48-201ENST00000417124 323 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 PPP1R11P2-201ENST00000423543 382 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RPL31P58-201ENST00000469001 379 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 FO393415.2-201ENST00000480085 343 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC010468.3-201ENST00000508225 458 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC027338.1-201ENST00000514840 825 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNA5SP291-201ENST00000517222 105 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 UBE2L4-201ENST00000587688 464 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC012467.1-201ENST00000607740 256 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AL138478.1-201ENST00000612252 832 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 MIR126-201ENST00000362291 85 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNU6-392P-201ENST00000364926 101 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNU6-432P-201ENST00000384196 109 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC007435.1-201ENST00000421086 415 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 KATNBL1P6-201ENST00000453433 915 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 TPRKBP1-201ENST00000456243 481 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AP1S2P1-201ENST00000457344 379 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC027575.1-201ENST00000481064 460 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 HMGN1P7-201ENST00000491722 313 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC121161.1-201ENST00000510606 652 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC093677.1-201ENST00000514414 678 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNU7-193P-201ENST00000516723 65 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 SLC2A13P1-201ENST00000531560 322 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 MIR3126-201ENST00000577443 74 ntBASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.16□□□□□ -2.22
SCN3AQ9NY46 RNU4-51P-201ENST00000364206 140 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 RNU6-748P-201ENST00000384648 107 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 MIR513A1-201ENST00000385138 129 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AL356421.1-201ENST00000403255 413 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 TPMTP2-201ENST00000414372 726 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 DEFB130D-201ENST00000426866 237 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 SNRPEP9-201ENST00000436794 238 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 MTCO1P53-201ENST00000441633 699 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AC005951.2-201ENST00000576282 495 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AC010133.1-201ENST00000615809 842 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 U4atac.1-201ENST00000618345 95 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AC099842.1-201ENST00000619919 596 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 AL138713.1-201ENST00000624026 2130 ntBASIC1.15□□□□□ -2.22
SCN3AQ9NY46 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 RNU6-359P-201ENST00000365466 108 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 HMGN1P14-201ENST00000412459 517 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 AC027644.1-201ENST00000419595 298 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 Z80107.1-201ENST00000436830 412 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 AC016691.1-201ENST00000441321 413 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 SMURF2P1-201ENST00000514992 481 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 RNA5SP490-201ENST00000517141 136 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SCN3AQ9NY46 CYCSP2-201ENST00000558168 301 ntBASIC1.15□□□□□ -2.23
SCN3AQ9NY46 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms