Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC008716.1-201ENST00000511084 513 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 RNU1-86P-201ENST00000516108 154 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 RNU1-107P-201ENST00000516617 154 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 RNU6-1178P-201ENST00000516674 107 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 Y_RNA.704-201ENST00000516851 102 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 SCARNA20.6-201ENST00000517251 106 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC006199.1-201ENST00000548728 219 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AL512360.1-201ENST00000555346 234 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 HMGB1P33-201ENST00000563485 527 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC136624.4-201ENST00000573044 370 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 MIR5583-1-201ENST00000580941 59 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC005261.5-201ENST00000596280 355 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 VN1R85P-201ENST00000601587 426 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC146944.4-201ENST00000602697 718 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC025165.5-201ENST00000602802 578 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 uc_338.1-201ENST00000612113 180 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 AC093536.2-201ENST00000565257 1406 ntBASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CHMP1AQ9HD42 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 SNORD14B-201ENST00000364533 90 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 SNORA69-201ENST00000383895 132 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 Y_RNA.481-201ENST00000384373 102 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 RNU6-45P-201ENST00000384471 107 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 RNU6-1127P-201ENST00000384580 107 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 RNU6-750P-201ENST00000390946 107 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 RNA5SP492-201ENST00000411330 114 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AF274854.1-201ENST00000413236 615 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 RPL7P37-201ENST00000425095 738 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 NDUFB1P2-201ENST00000449477 176 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 RNU7-180P-201ENST00000459240 63 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 TRBV1-201ENST00000476502 284 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC098799.2-201ENST00000509466 868 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 LINC00933-203ENST00000559812 219 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC025678.1-201ENST00000567861 338 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AL645944.1-201ENST00000603857 493 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AL591516.1-201ENST00000611326 274 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC084782.3-201ENST00000612282 578 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 MIR6134-201ENST00000617606 109 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 U6.42-201ENST00000618440 107 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 UCA1.1-201ENST00000620952 75 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AL356321.1-201ENST00000621360 228 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 AC091903.1-201ENST00000624322 454 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 MIR3199-2-201ENST00000636243 86 ntBASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.8□□□□□ -1.96
CHMP1AQ9HD42 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 ADAM3A-203ENST00000461344 2157 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RNU6-898P-201ENST00000365627 104 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RNU6-483P-201ENST00000384088 108 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 MIR181A1-201ENST00000385026 110 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RNU6-192P-201ENST00000391253 100 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RPL21P75-201ENST00000396599 483 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RPL21P28-201ENST00000401418 483 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 AL592114.1-201ENST00000403842 483 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 BX323014.1-201ENST00000412876 237 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 AL353621.1-201ENST00000418219 243 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RPL23AP58-201ENST00000440453 469 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 H2AFZP6-201ENST00000444403 394 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 NUTF2P7-201ENST00000453086 375 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 SNRPFP3-201ENST00000457792 225 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 SCARNA18-201ENST00000459004 134 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RNU6-261P-201ENST00000459506 102 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RN7SL75P-201ENST00000461926 281 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RPL21P39-201ENST00000463605 483 ntBASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.79□□□□□ -1.96
CHMP1AQ9HD42 RPL21P93-201ENST00000480465 489 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 149.5 ms