Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 PART1_1.1-201ENST00000611761 217 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AC008785.1-201ENST00000624475 456 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 Z69720.2-201ENST00000624755 279 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 RLIMP1-201ENST00000339626 1680 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-37P-201ENST00000362692 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-11P-201ENST00000364234 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-7-201ENST00000364784 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-8-201ENST00000365467 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-25P-201ENST00000383873 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-1-201ENST00000383898 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-48P-201ENST00000384161 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-36P-201ENST00000384172 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-4P-201ENST00000384205 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-5P-201ENST00000384238 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-3P-201ENST00000384314 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-16P-201ENST00000384385 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 SNORA37-201ENST00000384504 129 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-15P-201ENST00000384534 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-2-201ENST00000384627 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-29P-201ENST00000384637 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-9-201ENST00000384776 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-33P-201ENST00000384793 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 MIR559-201ENST00000385188 96 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 Y_RNA.594-201ENST00000410373 140 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC236972.1-201ENST00000433225 199 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 HMGB3P8-201ENST00000449709 577 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AL031274.1-201ENST00000450334 232 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 MTATP6P7-201ENST00000453315 681 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 SNORD5.1-201ENST00000458800 75 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNA5SP310-201ENST00000459084 116 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-1037P-201ENST00000459571 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC006517.1-201ENST00000480485 328 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RPS26P15-201ENST00000488067 348 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AL132838.2-201ENST00000492041 314 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC017037.1-201ENST00000508460 471 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC026782.1-201ENST00000512952 449 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 MIR2114-201ENST00000516645 80 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC025627.2-201ENST00000576220 160 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 MIR5684-201ENST00000585074 65 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC244505.7-201ENST00000599675 272 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 RNU6-6P-201ENST00000606623 107 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC009229.3-201ENST00000608056 282 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AC244517.12-201ENST00000623581 663 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 MTND5P19-201ENST00000424872 1794 ntBASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
TRIM39Q9HCM9 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.77
TRIM39Q9HCM9 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC008725.1-201ENST00000605123 2263 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 MAPK10-253ENST00000641010 4072 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 ZNF807-201ENST00000328088 1707 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.197-201ENST00000364004 102 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 RNU6-790P-201ENST00000384479 105 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 RNU6-306P-201ENST00000384617 107 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 RNU6-310P-201ENST00000384655 107 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 MIR517A-201ENST00000385001 87 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 RPS4XP3-201ENST00000398541 413 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 MIR888-201ENST00000401186 77 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 RPL5P18-201ENST00000406671 891 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC006026.2-201ENST00000457376 180 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 RNU7-187P-201ENST00000458985 68 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 RN7SL271P-201ENST00000487601 295 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC090096.1-201ENST00000489168 390 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC097473.1-201ENST00000508142 408 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms