Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC110491.1-201ENST00000562191 2010 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 Y_RNA.191-201ENST00000363972 113 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 MIR17-201ENST00000385012 84 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 UBE2FP3-201ENST00000436366 524 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 SNRPEP9-201ENST00000436794 238 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC244505.5-201ENST00000443639 207 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 SNORD121B-201ENST00000458838 81 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USP42Q9H9J4 HMGB1P28-201ENST00000507778 552 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC104417.1-201ENST00000523974 751 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 NACAP3-201ENST00000552100 481 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 CYCSP2-201ENST00000558168 301 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AF038458.1-201ENST00000588406 262 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL138478.1-201ENST00000612252 832 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC007490.1-201ENST00000624321 703 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 CENPCP1-201ENST00000533085 2578 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 MTND5P30-201ENST00000452896 1731 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 RNU6-1207P-201ENST00000384343 107 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 MIR676-201ENST00000390702 67 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 TPMTP3-201ENST00000411928 735 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 TPMTP2-201ENST00000414372 726 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AL161449.1-201ENST00000414531 1199 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AL445669.1-201ENST00000426743 755 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 UBE2D3P3-201ENST00000426992 425 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 MTND4P6-201ENST00000438297 472 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 AL096829.2-201ENST00000446582 742 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 PMCHL2-203ENST00000457791 237 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC118273.2-201ENST00000532092 465 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.9□□□□□ -2.11
USP42Q9H9J4 MIR3122-201ENST00000577243 73 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 MIR4287-201ENST00000579398 78 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC105245.1-201ENST00000581934 244 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 VN1R87P-201ENST00000596706 487 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC025165.5-201ENST00000602802 578 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC239868.4-201ENST00000608318 671 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 SDR42E1P2-201ENST00000614861 481 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 AC091948.2-201ENST00000636510 279 ntBASIC1.9□□□□□ -2.11
USP42Q9H9J4 Y_RNA.245-201ENST00000364493 95 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 RNU6-114P-201ENST00000384704 105 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 NDUFS5P4-201ENST00000412983 318 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 ZNF736P7Y-201ENST00000425158 820 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 MICF-203ENST00000432679 129 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AL136380.1-201ENST00000447970 162 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 CECR9-201ENST00000453421 199 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC008526.1-201ENST00000509149 338 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 SLC2A13P1-201ENST00000531560 322 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 MTCO2P15-201ENST00000532655 656 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 AL354943.1-201ENST00000572103 781 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 MIR4452-201ENST00000583004 71 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AL391813.1-201ENST00000603098 260 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC005776.1-201ENST00000603164 290 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC253576.2-201ENST00000618815 580 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AL353770.2-201ENST00000620024 78 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USP42Q9H9J4 AC109454.4-201ENST00000623411 649 ntBASIC1.89□□□□□ -2.11
USP42Q9H9J4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.89□□□□□ -2.11
USP42Q9H9J4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
USP42Q9H9J4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
USP42Q9H9J4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
USP42Q9H9J4 RNA5SP363-201ENST00000365072 115 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 Y_RNA.540-201ENST00000384638 111 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 MIR320A-201ENST00000385302 82 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 RNU6-952P-201ENST00000391164 108 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 UBE2FP1-201ENST00000416536 447 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 AL354695.1-201ENST00000427935 228 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC098831.1-201ENST00000440661 216 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC005410.1-202ENST00000460347 485 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 HMGB1P36-201ENST00000487709 576 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 RNU6-583P-201ENST00000516012 92 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms