Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.39□□□□□ -1.87
HERPUD2Q9BSE4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HERPUD2Q9BSE4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HERPUD2Q9BSE4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.39□□□□□ -1.87
HERPUD2Q9BSE4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HERPUD2Q9BSE4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC004520.1-201ENST00000608362 1413 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 RNU6-371P-201ENST00000364283 108 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 MIR34A-201ENST00000385130 110 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 RPS4XP8-201ENST00000402039 771 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AL031779.1-201ENST00000415663 330 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 PTGES3P4-201ENST00000426243 356 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 TOMM20P4-201ENST00000427861 435 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 CST9LP2-201ENST00000437612 320 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AL513043.1-201ENST00000439124 535 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 Z96811.1-201ENST00000445880 108 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC125238.1-201ENST00000448842 249 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AP003033.1-201ENST00000527244 415 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC234778.2-201ENST00000566241 354 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC092325.1-201ENST00000566449 554 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AL391813.1-201ENST00000603098 260 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AL162713.1-201ENST00000604480 262 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC087045.1-201ENST00000605856 382 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 MIR6863-201ENST00000636112 90 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC093908.1-201ENST00000623125 8092 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 MTND4P14-201ENST00000435799 1354 ntBASIC3.38□□□□□ -1.87
HERPUD2Q9BSE4 AC093536.2-201ENST00000565257 1406 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 MIR148B-201ENST00000362252 99 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RNA5SP267-201ENST00000364893 126 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RNU6-805P-201ENST00000365643 106 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RNVU1-14-201ENST00000384770 164 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 MIR147B-201ENST00000390185 80 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AL512633.1-201ENST00000399931 655 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AL591416.1-201ENST00000404015 867 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RNU2-29P-201ENST00000410423 189 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RPS15AP6-201ENST00000420703 385 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RPL23AP20-201ENST00000447965 421 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 NDUFB1P2-201ENST00000449477 176 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC027673.1-201ENST00000456245 405 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 GMFBP1-201ENST00000467831 427 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RPS26P21-201ENST00000475397 348 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 MTND2P33-201ENST00000506452 1031 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC116655.1-201ENST00000508324 901 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC104136.1-201ENST00000512969 394 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 RNU6-1178P-201ENST00000516674 107 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 MIR2682-201ENST00000580305 110 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 AC096577.2-201ENST00000611455 153 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 MIR7515-201ENST00000637837 67 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 Z83843.1-201ENST00000604070 3685 ntBASIC3.37□□□□□ -1.87
HERPUD2Q9BSE4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 CDC27P3-201ENST00000635418 1910 ntBASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 OR4G2P-201ENST00000328113 903 ntBASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 SNORD3E-201ENST00000362899 217 ntBASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 MIR10A-201ENST00000385043 110 ntBASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 U3.19-201ENST00000390893 196 ntBASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 SNORA11.1-201ENST00000408133 129 ntBASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 AL353705.1-201ENST00000433468 480 ntBASIC3.36□□□□□ -1.87
HERPUD2Q9BSE4 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms