Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC233279.1-201ENST00000455300 423 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 MRPL42P6-201ENST00000486397 371 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.39□□□□□ -2.03
VPS35Q96QK1 RNU6-1092P-201ENST00000516955 87 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 RNU6-1183P-201ENST00000517054 60 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS35Q96QK1 AP003122.3-201ENST00000526316 255 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC084851.1-201ENST00000529105 249 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AL121821.2-201ENST00000556081 394 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC012435.1-202ENST00000568772 240 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS35Q96QK1 MIR3199-1-201ENST00000582434 88 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS35Q96QK1 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC008121.1-201ENST00000603244 268 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AL645944.1-201ENST00000603857 493 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC091152.3-201ENST00000604227 325 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC067747.1-201ENST00000608026 250 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AC004223.4-201ENST00000612426 332 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AL365204.3-201ENST00000612448 685 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS35Q96QK1 MIR7844-201ENST00000616161 122 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 AL512643.1-201ENST00000635735 524 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 U6.99-201ENST00000637524 83 ntBASIC2.39□□□□□ -2.03
VPS35Q96QK1 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.39□□□□□ -2.03
VPS35Q96QK1 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 MTND4P27-201ENST00000450813 1354 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 MTCYBP36-201ENST00000404146 440 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC007064.1-201ENST00000412238 351 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 AL591212.2-201ENST00000433923 257 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC098826.1-201ENST00000433943 471 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AL512286.1-201ENST00000439244 400 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AL590365.1-201ENST00000450788 243 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 ZNF114P1-201ENST00000453500 292 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 RNU7-26P-201ENST00000458980 63 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC234781.5-201ENST00000508429 271 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC023141.11-201ENST00000508864 202 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC112673.1-201ENST00000513168 575 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 RNU6-1129P-201ENST00000515964 104 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 RNU2-10P-201ENST00000516375 211 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 RNA5SP24-201ENST00000516478 95 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 RN7SKP287-201ENST00000516546 266 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 RNU6-677P-201ENST00000516914 101 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC011979.2-201ENST00000527568 352 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
VPS35Q96QK1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
VPS35Q96QK1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 MIR5697-201ENST00000578045 78 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS35Q96QK1 MIR4760-201ENST00000585040 80 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC131159.1-201ENST00000621854 213 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC023510.2-201ENST00000622162 746 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC017037.3-201ENST00000625016 472 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 MIR203B-201ENST00000636080 86 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 AC069528.2-201ENST00000624849 1991 ntBASIC2.38□□□□□ -2.03
VPS35Q96QK1 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS35Q96QK1 RNU4-82P-201ENST00000362443 140 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 RNU6-220P-201ENST00000390919 107 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 BRK1P2-201ENST00000442875 223 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 RN7SL636P-201ENST00000497504 294 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC009902.1-201ENST00000519351 183 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS35Q96QK1 MIR4658-201ENST00000584344 65 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 AL359999.1-201ENST00000604513 294 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC007938.3-201ENST00000604965 623 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC093424.1-201ENST00000604999 338 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC034229.4-201ENST00000607861 441 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 HMGB1P24-202ENST00000615653 685 ntBASIC2.37□□□□□ -2.03
VPS35Q96QK1 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS35Q96QK1 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS35Q96QK1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 MIR449A-201ENST00000362113 91 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 RNU5F-7P-201ENST00000363696 115 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 RNU6-190P-201ENST00000384154 102 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 Y_RNA.534-201ENST00000384599 112 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS35Q96QK1 Y_RNA.608-201ENST00000410647 95 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 OR51A5P-201ENST00000415429 942 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms