Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RNU2-33P-201ENST00000410344 192 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC009237.10-201ENST00000414112 510 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AL117339.3-201ENST00000418733 162 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC007098.1-201ENST00000420122 367 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RPL35AP15-201ENST00000468042 339 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RN7SL303P-201ENST00000469773 251 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 SNORA25.11-201ENST00000515935 105 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 OR5D17P-201ENST00000531492 978 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC103996.1-201ENST00000555468 102 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 MIR5696-201ENST00000578474 85 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC008121.1-201ENST00000603244 268 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 MIR8076-201ENST00000611401 83 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AL161629.2-201ENST00000615347 275 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC103858.2-201ENST00000621471 543 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 MTND5P9-201ENST00000503854 1755 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC032011.1-201ENST00000611703 1549 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 RNA5SP175-201ENST00000364275 119 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 SNORA62-201ENST00000365493 153 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 RNU6-1026P-201ENST00000384465 108 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 MT-TW-201ENST00000387382 68 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 MTCO3P19-201ENST00000415864 321 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 AL159987.2-201ENST00000432754 307 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 snoU13.4-201ENST00000458916 104 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 RNU6-1132P-201ENST00000459214 107 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 VWA8P1-201ENST00000510889 176 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 AL645944.1-201ENST00000603857 493 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 AC010201.1-201ENST00000605051 540 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 AC114781.5-201ENST00000615297 108 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 AC078938.1-201ENST00000620993 318 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 AC140479.6-201ENST00000633535 357 ntBASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.1□□□□□ -1.75
PTCHD1Q96NR3 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 OR56A5-201ENST00000340110 738 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 RNU6-741P-201ENST00000383889 107 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 Y_RNA.552-201ENST00000384665 112 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 MIR628-201ENST00000385229 95 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 SNORA69.1-201ENST00000390904 137 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 SNORA40C-201ENST00000391285 128 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 RPL23AP48-201ENST00000406913 488 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AL160275.2-201ENST00000412010 394 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 ARL5AP4-201ENST00000430731 512 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 PIGFP3-201ENST00000441918 722 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 RPS23P7-201ENST00000466210 444 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 RN7SL41P-201ENST00000476144 297 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC139453.3-201ENST00000493276 369 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AK3P2-201ENST00000507976 429 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC008958.1-201ENST00000511047 682 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 SNORA40.15-201ENST00000516884 107 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 SNORA31.19-201ENST00000517079 126 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 RNA5SP291-201ENST00000517222 105 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC109479.2-201ENST00000517842 174 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 HSPE1P20-201ENST00000538133 289 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC090517.1-201ENST00000569307 266 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AC005255.1-201ENST00000593748 216 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 RPS29P30-201ENST00000600975 111 ntBASIC4.09□□□□□ -1.75
PTCHD1Q96NR3 AL390123.1-201ENST00000603216 237 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 356.1 ms