Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AP002791.1-201ENST00000623291 381 ntBASIC2.6□□□□□ -1.99
ZNF560Q96MR9 AC079248.2-201ENST00000623779 326 ntBASIC2.6□□□□□ -1.99
ZNF560Q96MR9 MIR1291-201ENST00000627649 87 ntBASIC2.6□□□□□ -1.99
ZNF560Q96MR9 MTND4P35-201ENST00000604257 1375 ntBASIC2.6□□□□□ -1.99
ZNF560Q96MR9 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.6□□□□□ -1.99
ZNF560Q96MR9 AC093536.2-201ENST00000565257 1406 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 HSPE1P11-201ENST00000339579 310 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 MIR301A-201ENST00000385261 86 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 FCF1P10-201ENST00000407590 479 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 USP9YP6-201ENST00000413550 854 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 RPS15AP12-201ENST00000419498 388 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AC137499.1-201ENST00000427602 88 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AL591704.1-201ENST00000432574 275 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 MICF-203ENST00000432679 129 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AC073901.1-201ENST00000462471 408 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 MTCO2P29-201ENST00000465212 189 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AP000797.1-201ENST00000478870 387 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 RNU6-677P-201ENST00000516914 101 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AC021269.2-201ENST00000532318 330 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 OR5BN1P-201ENST00000532955 829 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AC008015.1-201ENST00000555505 465 ntBASIC2.59□□□□□ -1.99
ZNF560Q96MR9 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
ZNF560Q96MR9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.58□□□□□ -2
ZNF560Q96MR9 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.58□□□□□ -2
ZNF560Q96MR9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
ZNF560Q96MR9 SNORD114-30-201ENST00000364448 72 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 RNU5E-5P-201ENST00000365379 116 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.58□□□□□ -2
ZNF560Q96MR9 Y_RNA.534-201ENST00000384599 112 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 TAS2R15P-201ENST00000390674 928 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 RPS4XP7-201ENST00000406274 780 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC098826.1-201ENST00000433943 471 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AL161651.1-201ENST00000440882 223 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC233279.1-201ENST00000455300 423 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 RN7SL636P-201ENST00000497504 294 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 NDUFB4P2-201ENST00000509515 391 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.58□□□□□ -2
ZNF560Q96MR9 RNA5SP337-201ENST00000517007 109 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 RNU6-1183P-201ENST00000517054 60 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 AC022878.1-201ENST00000530684 149 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC091152.3-201ENST00000604227 325 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 AC007938.3-201ENST00000604965 623 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 AC008993.2-201ENST00000631744 806 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 CU459211.1-201ENST00000635667 749 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 Z99571.1-201ENST00000636677 394 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.58□□□□□ -2
ZNF560Q96MR9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.58□□□□□ -2
ZNF560Q96MR9 AC080128.1-201ENST00000474389 1917 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 TEX21P-201ENST00000447107 1476 ntBASIC2.58□□□□□ -2
ZNF560Q96MR9 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.58□□□□□ -2
ZNF560Q96MR9 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.57□□□□□ -2
ZNF560Q96MR9 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.57□□□□□ -2
ZNF560Q96MR9 AC131280.1-202ENST00000624067 4211 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.57□□□□□ -2
ZNF560Q96MR9 RNU4-1-201ENST00000363925 141 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.57□□□□□ -2
ZNF560Q96MR9 RNU6-946P-201ENST00000383878 107 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 MRPL42P2-201ENST00000403169 426 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 RNU6-920P-201ENST00000410926 92 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 RNA5SP508-201ENST00000411327 119 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.57□□□□□ -2
ZNF560Q96MR9 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
ZNF560Q96MR9 MTND5P25-201ENST00000430499 799 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.57□□□□□ -2
ZNF560Q96MR9 AL591212.2-201ENST00000433923 257 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 UBE2D3P1-201ENST00000436669 444 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 COX6CP12-201ENST00000446748 202 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 EPS15P1-201ENST00000448836 336 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 GZMAP1-201ENST00000503054 631 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.57□□□□□ -2
ZNF560Q96MR9 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.57□□□□□ -2
ZNF560Q96MR9 SNORA31.6-201ENST00000516241 130 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 RNU7-51P-201ENST00000516560 62 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 RNU6-232P-201ENST00000517144 64 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 RNU1-104P-201ENST00000517280 175 ntBASIC2.57□□□□□ -2
ZNF560Q96MR9 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
ZNF560Q96MR9 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.57□□□□□ -2
ZNF560Q96MR9 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
ZNF560Q96MR9 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.57□□□□□ -2
ZNF560Q96MR9 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms