Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.61□□□□□ -2.31
USF3Q68DE3 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.61□□□□□ -2.31
USF3Q68DE3 AC012435.1-202ENST00000568772 240 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 HMGN2P15-201ENST00000585707 270 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AL021997.1-201ENST00000605757 193 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AP002826.1-201ENST00000608835 315 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC243829.6-201ENST00000612652 106 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC090132.2-201ENST00000615881 347 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC006213.4-201ENST00000616184 634 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AL118508.4-201ENST00000624142 1176 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
USF3Q68DE3 MTND4P8-201ENST00000514997 1362 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.6□□□□□ -2.31
USF3Q68DE3 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.6□□□□□ -2.31
USF3Q68DE3 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 U6atac.2-201ENST00000408644 118 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
USF3Q68DE3 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.6□□□□□ -2.31
USF3Q68DE3 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC0.6□□□□□ -2.31
USF3Q68DE3 AC016691.1-201ENST00000441321 413 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.6□□□□□ -2.31
USF3Q68DE3 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC0.6□□□□□ -2.31
USF3Q68DE3 SNORD116-30-201ENST00000516468 85 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC025857.1-201ENST00000525252 377 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.6□□□□□ -2.31
USF3Q68DE3 MIR4504-201ENST00000577413 92 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC006270.3-201ENST00000605967 1036 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AP003476.1-201ENST00000623984 516 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 MTND5P31-201ENST00000419366 1374 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
USF3Q68DE3 RNU6-339P-201ENST00000384310 107 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 RPS24P7-201ENST00000416921 246 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 RPL7P29-201ENST00000437151 728 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC0.6□□□□□ -2.31
USF3Q68DE3 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC0.6□□□□□ -2.31
USF3Q68DE3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.6□□□□□ -2.31
USF3Q68DE3 AC067904.2-201ENST00000517322 1283 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 OR8K4P-201ENST00000534608 872 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.6□□□□□ -2.31
USF3Q68DE3 RRN3P3-201ENST00000549207 578 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 CYCSP2-201ENST00000558168 301 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.6□□□□□ -2.31
USF3Q68DE3 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
USF3Q68DE3 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.6□□□□□ -2.31
USF3Q68DE3 AC022254.1-201ENST00000567857 235 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 MIR4711-201ENST00000578274 70 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC104763.3-201ENST00000613765 618 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AP002791.1-201ENST00000623291 381 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC068057.2-201ENST00000624047 895 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AC004808.1-201ENST00000627671 721 ntBASIC0.6□□□□□ -2.31
USF3Q68DE3 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.6□□□□□ -2.31
USF3Q68DE3 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.59□□□□□ -2.31
USF3Q68DE3 Y_RNA.458-201ENST00000384240 102 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
USF3Q68DE3 MIR1303-201ENST00000408625 86 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 AC023141.4-201ENST00000412031 328 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.59□□□□□ -2.31
USF3Q68DE3 AK3P2-201ENST00000507976 429 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 AC067942.3-201ENST00000512025 362 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC0.59□□□□□ -2.31
USF3Q68DE3 MTCYBP27-201ENST00000555160 670 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC0.59□□□□□ -2.31
USF3Q68DE3 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC0.59□□□□□ -2.31
USF3Q68DE3 GAS5-AS1-201ENST00000602767 694 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 AC079791.1-201ENST00000605356 973 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 AL137246.1-201ENST00000607072 977 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 AC091925.1-201ENST00000623204 462 ntBASIC0.59□□□□□ -2.31
USF3Q68DE3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.59□□□□□ -2.31
USF3Q68DE3 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC0.59□□□□□ -2.32
USF3Q68DE3 RNA5SP240-201ENST00000365355 128 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 RNA5SP193-201ENST00000410353 107 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 RNA5SP511-201ENST00000410487 115 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 RNU6-733P-201ENST00000410759 104 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 MTND5P15-201ENST00000434246 349 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 MTND6P13-201ENST00000443510 523 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC0.58□□□□□ -2.32
USF3Q68DE3 AC025459.1-201ENST00000504072 156 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC0.58□□□□□ -2.32
USF3Q68DE3 AC107953.1-201ENST00000522216 297 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 AC011374.2-201ENST00000607135 526 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.58□□□□□ -2.32
USF3Q68DE3 AC090517.3-201ENST00000625170 141 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
USF3Q68DE3 Y_RNA.85-201ENST00000363014 111 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 RNU6-374P-201ENST00000364146 108 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 SNORA40.19-201ENST00000390846 128 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 AL356421.1-201ENST00000403255 413 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 RNU6-233P-201ENST00000410845 141 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 TOMM22P2-201ENST00000430735 237 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.58□□□□□ -2.32
USF3Q68DE3 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.58□□□□□ -2.32
USF3Q68DE3 MIR892C-201ENST00000516410 77 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC0.58□□□□□ -2.32
USF3Q68DE3 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.58□□□□□ -2.32
USF3Q68DE3 CR383656.7-201ENST00000548164 174 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC0.58□□□□□ -2.32
USF3Q68DE3 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms