Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 RPS15AP28-201ENST00000435088 386 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 HMGB3P12-201ENST00000438745 556 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 MTND5P2-201ENST00000442927 1142 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AL591719.1-201ENST00000444669 744 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC011753.1-201ENST00000451001 220 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 SSXP1-201ENST00000453640 473 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 RNU6-953P-201ENST00000459154 107 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 GZMAP1-201ENST00000503054 631 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AF131216.2-201ENST00000512316 564 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 RNA5SP24-201ENST00000516478 95 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AL121821.2-201ENST00000556081 394 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 MIR3167-201ENST00000579623 85 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC008121.1-201ENST00000603244 268 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC006023.1-201ENST00000603944 259 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC105129.3-201ENST00000605455 485 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC046143.2-201ENST00000609789 160 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AL365204.3-201ENST00000612448 685 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC104010.1-201ENST00000616889 150 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AP002791.1-201ENST00000623291 381 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 FRG1KP-201ENST00000623592 341 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 MTND5P42-201ENST00000637720 498 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 RNU6-920P-201ENST00000410926 92 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 RPS15AP12-201ENST00000419498 388 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC006366.1-201ENST00000422002 759 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC010099.3-201ENST00000423896 409 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC40Q4G0X9 AL512286.1-201ENST00000439244 400 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 AL031659.1-201ENST00000447075 539 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 MRPL42P6-201ENST00000486397 371 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 RNU6-143P-201ENST00000516942 93 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 RNU6-1092P-201ENST00000516955 87 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 RNU6-1183P-201ENST00000517054 60 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 IGLV3-17-201ENST00000519099 244 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 AP003122.3-201ENST00000526316 255 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC084851.1-201ENST00000529105 249 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC007938.3-201ENST00000604965 623 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 CU459211.1-201ENST00000635667 749 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 Z99571.1-201ENST00000636677 394 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 U6.99-201ENST00000637524 83 ntBASIC2.54□□□□□ -2
CCDC40Q4G0X9 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
CCDC40Q4G0X9 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC40Q4G0X9 ZNF720P1-201ENST00000562403 1939 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.53□□□□□ -2
CCDC40Q4G0X9 OR5H15-201ENST00000383696 930 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MIR524-201ENST00000385242 87 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MTCYBP36-201ENST00000404146 440 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.53□□□□□ -2
CCDC40Q4G0X9 MTND1P23-201ENST00000416931 372 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.53□□□□□ -2
CCDC40Q4G0X9 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.53□□□□□ -2
CCDC40Q4G0X9 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.53□□□□□ -2
CCDC40Q4G0X9 WARS2P1-201ENST00000429678 537 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MICF-203ENST00000432679 129 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.53□□□□□ -2
CCDC40Q4G0X9 BRK1P2-201ENST00000442875 223 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 EEF1B2P7-201ENST00000451177 676 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MTND1P12-201ENST00000455231 147 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 RN7SL636P-201ENST00000497504 294 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 RNU2-10P-201ENST00000516375 211 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 AC009902.1-201ENST00000519351 183 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 EEF1A1P37-201ENST00000522748 715 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC40Q4G0X9 AC078814.3-201ENST00000553036 491 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.53□□□□□ -2
CCDC40Q4G0X9 AC009094.1-201ENST00000564443 426 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MIR5697-201ENST00000578045 78 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC40Q4G0X9 MIR3199-1-201ENST00000582434 88 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 AL512643.1-201ENST00000635735 524 ntBASIC2.53□□□□□ -2
CCDC40Q4G0X9 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 Z98749.2-208ENST00000381646 500 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms