Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 SNORA3A-201ENST00000364113 130 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 MT-TC-201ENST00000387405 66 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 RNU4-78P-201ENST00000410940 126 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL591043.1-201ENST00000432461 424 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 LARP1BP2-201ENST00000486594 519 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 RNU6-27P-201ENST00000516146 107 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AP003497.1-201ENST00000528472 562 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AC105224.1-201ENST00000587055 421 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL109918.3-201ENST00000603072 338 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 BX322635.1-201ENST00000605804 496 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AC004852.3-201ENST00000614131 326 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AC073592.7-201ENST00000623659 507 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 SNORA16B-201ENST00000364674 135 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 MIR329-2-201ENST00000385029 84 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 Y_RNA.610-201ENST00000410681 103 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AL109913.1-201ENST00000421173 514 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC138853.1-201ENST00000503549 823 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AL391261.3-201ENST00000557194 520 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC008269.2-201ENST00000561915 1105 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC243960.4-201ENST00000600532 288 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 XIAPP1-201ENST00000603162 600 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC007038.2-201ENST00000608095 740 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 CISD1P1-201ENST00000393907 327 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 RNA5SP56-201ENST00000410277 118 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC103851.1-201ENST00000506833 274 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 SCARNA11.3-201ENST00000517276 130 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 DUXAP1-201ENST00000556632 463 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC012435.1-202ENST00000568772 240 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 MIR4636-201ENST00000582271 80 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC025165.5-201ENST00000602802 578 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 AC110792.4-201ENST00000609843 298 ntBASIC0.62□□□□□ -2.31
CHD9Q3L8U1 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 RNU6-1155P-201ENST00000363554 107 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 RNU6-30P-201ENST00000384561 107 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 MIR1265-201ENST00000408444 86 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 MIR1303-201ENST00000408625 86 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AC096649.2-201ENST00000416186 393 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 MICF-203ENST00000432679 129 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AC091965.2-201ENST00000512324 613 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AP006248.3-201ENST00000623580 594 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AP003400.5-201ENST00000624827 617 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 MIR508-201ENST00000384857 115 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 DSTNP4-201ENST00000399472 474 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 MIR1302-8-201ENST00000408342 128 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 U6atac.2-201ENST00000408644 118 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 RN7SKP61-201ENST00000410642 295 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AL161449.1-201ENST00000414531 1199 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 SDAD1P3-201ENST00000427380 333 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 TRGVB-201ENST00000453257 471 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
CHD9Q3L8U1 OR8K4P-201ENST00000534608 872 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AL450336.1-201ENST00000605180 586 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 AC008498.1-201ENST00000613012 531 ntBASIC0.61□□□□□ -2.31
CHD9Q3L8U1 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC005410.1-202ENST00000460347 485 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC092757.1-201ENST00000467293 467 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 RNU6-491P-201ENST00000516099 110 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 RNU6-798P-201ENST00000516912 103 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 FAM60BP-201ENST00000578364 658 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC040174.2-201ENST00000602701 465 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AL137246.1-201ENST00000607072 977 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AL049641.1-201ENST00000441055 1948 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 Y_RNA.170-201ENST00000363746 110 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms