Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MIR6852-201ENST00000621699 66 ntBASIC2.3□□□□□ -2.04
LIM2P55344 AC091931.1-201ENST00000623488 728 ntBASIC2.3□□□□□ -2.04
LIM2P55344 AC243829.7-201ENST00000633081 225 ntBASIC2.3□□□□□ -2.04
LIM2P55344 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LIM2P55344 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
LIM2P55344 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
LIM2P55344 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
LIM2P55344 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.3□□□□□ -2.04
LIM2P55344 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.3□□□□□ -2.04
LIM2P55344 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LIM2P55344 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
LIM2P55344 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.29□□□□□ -2.04
LIM2P55344 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIM2P55344 AC069528.2-201ENST00000624849 1991 ntBASIC2.29□□□□□ -2.04
LIM2P55344 TEX21P-201ENST00000447107 1476 ntBASIC2.29□□□□□ -2.04
LIM2P55344 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LIM2P55344 RNU6-946P-201ENST00000383878 107 ntBASIC2.29□□□□□ -2.04
LIM2P55344 Y_RNA.534-201ENST00000384599 112 ntBASIC2.29□□□□□ -2.04
LIM2P55344 SNORA26.8-201ENST00000391306 124 ntBASIC2.29□□□□□ -2.04
LIM2P55344 UBE2V1P2-201ENST00000397758 440 ntBASIC2.29□□□□□ -2.04
LIM2P55344 AL513477.1-202ENST00000417061 214 ntBASIC2.29□□□□□ -2.04
LIM2P55344 NPM1P11-201ENST00000417106 855 ntBASIC2.29□□□□□ -2.04
LIM2P55344 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.29□□□□□ -2.04
LIM2P55344 AL109913.1-201ENST00000421173 514 ntBASIC2.29□□□□□ -2.04
LIM2P55344 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.29□□□□□ -2.04
LIM2P55344 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 AL033528.1-201ENST00000453780 140 ntBASIC2.29□□□□□ -2.04
LIM2P55344 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.29□□□□□ -2.04
LIM2P55344 MTND3P7-201ENST00000474435 343 ntBASIC2.29□□□□□ -2.04
LIM2P55344 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 SCARNA11.3-201ENST00000517276 130 ntBASIC2.29□□□□□ -2.04
LIM2P55344 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
LIM2P55344 AC010546.1-201ENST00000569391 485 ntBASIC2.29□□□□□ -2.04
LIM2P55344 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.29□□□□□ -2.04
LIM2P55344 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.29□□□□□ -2.04
LIM2P55344 AC011939.3-201ENST00000613686 466 ntBASIC2.29□□□□□ -2.04
LIM2P55344 AP001506.1-201ENST00000615444 211 ntBASIC2.29□□□□□ -2.04
LIM2P55344 AC008147.4-201ENST00000617570 1204 ntBASIC2.29□□□□□ -2.04
LIM2P55344 AL589994.2-201ENST00000621124 579 ntBASIC2.29□□□□□ -2.04
LIM2P55344 PISRT1-201ENST00000626175 531 ntBASIC2.29□□□□□ -2.04
LIM2P55344 CU459211.1-201ENST00000635667 749 ntBASIC2.29□□□□□ -2.04
LIM2P55344 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
LIM2P55344 AC026241.1-201ENST00000517873 2142 ntBASIC2.29□□□□□ -2.04
LIM2P55344 FARSBP1-201ENST00000435808 1778 ntBASIC2.28□□□□□ -2.04
LIM2P55344 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.28□□□□□ -2.04
LIM2P55344 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LIM2P55344 NACAP2-201ENST00000318548 624 ntBASIC2.28□□□□□ -2.04
LIM2P55344 RNU5E-1-201ENST00000362477 120 ntBASIC2.28□□□□□ -2.04
LIM2P55344 RNU6-188P-201ENST00000364207 107 ntBASIC2.28□□□□□ -2.04
LIM2P55344 RNY1P12-201ENST00000364251 105 ntBASIC2.28□□□□□ -2.04
LIM2P55344 SNORA68.1-201ENST00000364537 132 ntBASIC2.28□□□□□ -2.04
LIM2P55344 RNU6-190P-201ENST00000384154 102 ntBASIC2.28□□□□□ -2.04
LIM2P55344 MIR558-201ENST00000384920 94 ntBASIC2.28□□□□□ -2.04
LIM2P55344 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
LIM2P55344 AF228730.1-201ENST00000397972 663 ntBASIC2.28□□□□□ -2.04
LIM2P55344 RPS3AP36-201ENST00000398190 775 ntBASIC2.28□□□□□ -2.04
LIM2P55344 AC023141.4-201ENST00000412031 328 ntBASIC2.28□□□□□ -2.04
LIM2P55344 ELOCP4-201ENST00000420090 333 ntBASIC2.28□□□□□ -2.04
LIM2P55344 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LIM2P55344 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.28□□□□□ -2.04
LIM2P55344 SETP8-201ENST00000435341 628 ntBASIC2.28□□□□□ -2.04
LIM2P55344 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.28□□□□□ -2.04
LIM2P55344 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.28□□□□□ -2.04
LIM2P55344 MTND4P25-201ENST00000441039 533 ntBASIC2.28□□□□□ -2.04
LIM2P55344 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LIM2P55344 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.28□□□□□ -2.04
LIM2P55344 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.28□□□□□ -2.04
LIM2P55344 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.28□□□□□ -2.04
LIM2P55344 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.28□□□□□ -2.04
LIM2P55344 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.28□□□□□ -2.04
LIM2P55344 AC022447.1-201ENST00000515358 464 ntBASIC2.28□□□□□ -2.04
LIM2P55344 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.28□□□□□ -2.04
LIM2P55344 AC109329.2-201ENST00000519658 482 ntBASIC2.28□□□□□ -2.04
LIM2P55344 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LIM2P55344 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.28□□□□□ -2.04
LIM2P55344 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LIM2P55344 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.28□□□□□ -2.04
LIM2P55344 AC005771.1-201ENST00000585581 349 ntBASIC2.28□□□□□ -2.04
LIM2P55344 AL355877.2-201ENST00000603670 358 ntBASIC2.28□□□□□ -2.04
LIM2P55344 AL645944.1-201ENST00000603857 493 ntBASIC2.28□□□□□ -2.04
LIM2P55344 AC131902.3-201ENST00000611767 581 ntBASIC2.28□□□□□ -2.04
LIM2P55344 AC097520.1-201ENST00000624435 385 ntBASIC2.28□□□□□ -2.04
LIM2P55344 CTSLP2-204ENST00000629029 392 ntBASIC2.28□□□□□ -2.04
LIM2P55344 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LIM2P55344 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LIM2P55344 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.28□□□□□ -2.05
LIM2P55344 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.27□□□□□ -2.05
LIM2P55344 AC016717.2-201ENST00000609089 5141 ntBASIC2.27□□□□□ -2.05
LIM2P55344 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LIM2P55344 MIR21-201ENST00000362134 72 ntBASIC2.27□□□□□ -2.05
LIM2P55344 SNORD56.5-201ENST00000364281 72 ntBASIC2.27□□□□□ -2.05
LIM2P55344 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
LIM2P55344 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.27□□□□□ -2.05
LIM2P55344 RNY3P9-201ENST00000384727 106 ntBASIC2.27□□□□□ -2.05
LIM2P55344 RNY3P10-201ENST00000384764 102 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms