Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL670379.8-201ENST00000605353 252 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.9-201ENST00000605428 253 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC021646.1-201ENST00000605469 484 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.7-201ENST00000605823 252 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL359314.1-201ENST00000616913 261 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 ZNF680P1-201ENST00000436625 1469 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.97□□□□□ -2.25
FOXA3P55318 Y_RNA.245-201ENST00000364493 95 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 RNU6-60P-201ENST00000364792 103 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 RNU1-39P-201ENST00000383897 165 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 RNU6-939P-201ENST00000384634 107 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.97□□□□□ -2.25
FOXA3P55318 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC0.97□□□□□ -2.25
FOXA3P55318 MTND1P28-201ENST00000435623 950 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.97□□□□□ -2.25
FOXA3P55318 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC0.97□□□□□ -2.25
FOXA3P55318 OFD1P3Y-201ENST00000453312 783 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.97□□□□□ -2.25
FOXA3P55318 FAM92A1P2-202ENST00000504766 877 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.97□□□□□ -2.25
FOXA3P55318 SNORA48.9-201ENST00000516419 162 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 RNU6-551P-201ENST00000516661 103 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 RNU6-295P-201ENST00000516901 104 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 MTCO2P15-201ENST00000532655 656 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 AC005832.3-201ENST00000537929 631 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 AC135279.1-201ENST00000543493 504 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 RRN3P3-201ENST00000549207 578 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 MRPS36P5-201ENST00000551909 298 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 AL645939.4-201ENST00000604495 135 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 ELOCP5-201ENST00000604924 333 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 AC017037.3-201ENST00000625016 472 ntBASIC0.97□□□□□ -2.25
FOXA3P55318 RNU6-492P-201ENST00000363035 104 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 RNU1-23P-201ENST00000363361 144 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 RNU1-57P-201ENST00000384491 166 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 SFR1P2-201ENST00000421841 730 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.96□□□□□ -2.26
FOXA3P55318 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC0.96□□□□□ -2.26
FOXA3P55318 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.96□□□□□ -2.26
FOXA3P55318 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 GTF2IP12-201ENST00000456547 356 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 AC008481.1-201ENST00000463278 396 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 RPS15AP17-201ENST00000470598 390 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AC108729.2-201ENST00000476543 840 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AC099513.1-201ENST00000490423 301 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 RPS15AP36-201ENST00000492022 382 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC0.96□□□□□ -2.26
FOXA3P55318 SNORA25.11-201ENST00000515935 105 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC0.96□□□□□ -2.26
FOXA3P55318 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 PSMA3P-201ENST00000555485 635 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA3P55318 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AC010133.1-201ENST00000615809 842 ntBASIC0.96□□□□□ -2.26
FOXA3P55318 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.96□□□□□ -2.26
FOXA3P55318 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
FOXA3P55318 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
FOXA3P55318 RNU6-661P-201ENST00000362409 107 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 RNA5SP126-201ENST00000365092 109 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 RNU6-637P-201ENST00000384050 107 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 MIR506-201ENST00000384998 124 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
FOXA3P55318 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
FOXA3P55318 RNU6-174P-201ENST00000410406 106 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 RNU2-68P-201ENST00000410878 191 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC0.95□□□□□ -2.26
FOXA3P55318 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.95□□□□□ -2.26
FOXA3P55318 VN1R42P-201ENST00000424651 344 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
FOXA3P55318 MTND5P25-201ENST00000430499 799 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 MTCO2P20-201ENST00000437339 673 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 NDUFAF4P2-201ENST00000445374 520 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 MTCYBP11-201ENST00000447254 1109 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 ARPC3P5-201ENST00000448802 534 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 AC245102.2-201ENST00000448956 180 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 SNORA59A-201ENST00000459326 152 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 APOA2-205ENST00000468465 421 ntTSL 2 BASIC0.95□□□□□ -2.26
FOXA3P55318 MTCYBP18-201ENST00000501056 747 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC0.95□□□□□ -2.26
FOXA3P55318 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC0.95□□□□□ -2.26
FOXA3P55318 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC0.95□□□□□ -2.26
FOXA3P55318 AC012213.3-201ENST00000577199 777 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 MIR4513-201ENST00000581077 86 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 RMST_6.1-201ENST00000611980 203 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 VN1R9P-201ENST00000614184 867 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 AL590396.4-201ENST00000636779 956 ntBASIC0.95□□□□□ -2.26
FOXA3P55318 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
FOXA3P55318 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC0.95□□□□□ -2.26
FOXA3P55318 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC0.94□□□□□ -2.26
FOXA3P55318 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
FOXA3P55318 SUGT1P1-201ENST00000379514 476 ntBASIC0.94□□□□□ -2.26
FOXA3P55318 MIR217-201ENST00000384817 110 ntBASIC0.94□□□□□ -2.26
FOXA3P55318 MIR1285-1-201ENST00000408593 84 ntBASIC0.94□□□□□ -2.26
FOXA3P55318 OR51A5P-201ENST00000415429 942 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms