Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-229P-201ENST00000516614 102 ntBASIC0.95□□□□□ -2.26
CUX1P39880 RNU6-1328P-201ENST00000410938 106 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AL158823.1-201ENST00000418441 478 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AL109913.1-201ENST00000421173 514 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AL714022.1-201ENST00000439897 151 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC079448.1-201ENST00000449377 373 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC107626.1-201ENST00000471084 183 ntBASIC0.94□□□□□ -2.26
CUX1P39880 OR2A41P-201ENST00000473586 105 ntBASIC0.94□□□□□ -2.26
CUX1P39880 HMGN1P10-201ENST00000474557 553 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC116337.2-201ENST00000477662 156 ntBASIC0.94□□□□□ -2.26
CUX1P39880 FAM206BP-201ENST00000510179 541 ntBASIC0.94□□□□□ -2.26
CUX1P39880 RNU6-1004P-201ENST00000516584 111 ntBASIC0.94□□□□□ -2.26
CUX1P39880 RNA5SP285-201ENST00000516619 119 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AL132857.1-201ENST00000555180 708 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.94□□□□□ -2.26
CUX1P39880 U6.48-201ENST00000618523 106 ntBASIC0.94□□□□□ -2.26
CUX1P39880 MRPS36P1-201ENST00000421291 307 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.94□□□□□ -2.26
CUX1P39880 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.94□□□□□ -2.26
CUX1P39880 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.94□□□□□ -2.26
CUX1P39880 RPS27P23-201ENST00000487608 251 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC098591.2-201ENST00000510152 315 ntBASIC0.94□□□□□ -2.26
CUX1P39880 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.94□□□□□ -2.26
CUX1P39880 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.94□□□□□ -2.26
CUX1P39880 MIR4504-201ENST00000577413 92 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC096720.1-201ENST00000604441 183 ntBASIC0.94□□□□□ -2.26
CUX1P39880 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.94□□□□□ -2.26
CUX1P39880 Y_RNA.60-201ENST00000362831 98 ntBASIC0.93□□□□□ -2.26
CUX1P39880 RNU1-72P-201ENST00000362976 153 ntBASIC0.93□□□□□ -2.26
CUX1P39880 RNU6-185P-201ENST00000384421 107 ntBASIC0.93□□□□□ -2.26
CUX1P39880 RNA5SP63-201ENST00000391225 112 ntBASIC0.93□□□□□ -2.26
CUX1P39880 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.93□□□□□ -2.26
CUX1P39880 FGF7P5-201ENST00000441829 291 ntBASIC0.93□□□□□ -2.26
CUX1P39880 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.93□□□□□ -2.26
CUX1P39880 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.93□□□□□ -2.26
CUX1P39880 UBE2Q2P9-201ENST00000490086 202 ntBASIC0.93□□□□□ -2.26
CUX1P39880 TPTE2P4-201ENST00000258589 1605 ntBASIC0.92□□□□□ -2.26
CUX1P39880 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.92□□□□□ -2.26
CUX1P39880 RNA5SP212-201ENST00000391223 107 ntBASIC0.92□□□□□ -2.26
CUX1P39880 AC093106.2-201ENST00000428212 385 ntBASIC0.92□□□□□ -2.26
CUX1P39880 AC092393.1-201ENST00000439625 742 ntBASIC0.92□□□□□ -2.26
CUX1P39880 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.92□□□□□ -2.26
CUX1P39880 RPL31P60-201ENST00000478450 367 ntBASIC0.92□□□□□ -2.26
CUX1P39880 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CUX1P39880 SNORA70.16-201ENST00000516390 95 ntBASIC0.92□□□□□ -2.26
CUX1P39880 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.92□□□□□ -2.26
CUX1P39880 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC0.92□□□□□ -2.26
CUX1P39880 AL355802.3-201ENST00000607571 545 ntBASIC0.92□□□□□ -2.26
CUX1P39880 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.92□□□□□ -2.26
CUX1P39880 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CUX1P39880 RNU6-418P-201ENST00000384035 107 ntBASIC0.91□□□□□ -2.26
CUX1P39880 RNU6-1197P-201ENST00000391183 107 ntBASIC0.91□□□□□ -2.26
CUX1P39880 AC019070.1-201ENST00000415008 1024 ntBASIC0.91□□□□□ -2.26
CUX1P39880 AC241584.1-201ENST00000438469 1241 ntBASIC0.91□□□□□ -2.26
CUX1P39880 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.91□□□□□ -2.26
CUX1P39880 RNU7-23P-201ENST00000459465 62 ntBASIC0.91□□□□□ -2.26
CUX1P39880 AC104689.1-201ENST00000473356 768 ntBASIC0.91□□□□□ -2.26
CUX1P39880 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
CUX1P39880 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
CUX1P39880 AC010186.2-204ENST00000537668 439 ntBASIC0.91□□□□□ -2.26
CUX1P39880 AC011260.1-201ENST00000578420 472 ntBASIC0.91□□□□□ -2.26
CUX1P39880 CYP2C61P-201ENST00000604072 290 ntBASIC0.91□□□□□ -2.26
CUX1P39880 BX322635.1-201ENST00000605804 496 ntBASIC0.91□□□□□ -2.26
CUX1P39880 AC126177.8-201ENST00000618339 1015 ntBASIC0.91□□□□□ -2.26
CUX1P39880 MIR6759-201ENST00000638110 65 ntBASIC0.91□□□□□ -2.26
CUX1P39880 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.91□□□□□ -2.26
CUX1P39880 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
CUX1P39880 AC016716.1-201ENST00000265882 708 ntBASIC0.9□□□□□ -2.26
CUX1P39880 MIR146A-201ENST00000385201 99 ntBASIC0.9□□□□□ -2.26
CUX1P39880 AL589655.1-201ENST00000405398 482 ntBASIC0.9□□□□□ -2.26
CUX1P39880 AL034418.1-201ENST00000448675 860 ntBASIC0.9□□□□□ -2.26
CUX1P39880 BUD31P2-201ENST00000449374 300 ntBASIC0.9□□□□□ -2.26
CUX1P39880 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.9□□□□□ -2.26
CUX1P39880 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.9□□□□□ -2.26
CUX1P39880 OR5B19P-201ENST00000531766 928 ntBASIC0.9□□□□□ -2.26
CUX1P39880 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.9□□□□□ -2.26
CUX1P39880 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.9□□□□□ -2.26
CUX1P39880 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.9□□□□□ -2.26
CUX1P39880 AC090132.2-201ENST00000615881 347 ntBASIC0.9□□□□□ -2.26
CUX1P39880 AC024595.1-201ENST00000623088 387 ntBASIC0.9□□□□□ -2.26
CUX1P39880 AP003399.1-201ENST00000637534 361 ntBASIC0.9□□□□□ -2.26
CUX1P39880 LINC02211-204ENST00000642024 1070 ntBASIC0.9□□□□□ -2.26
CUX1P39880 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.9□□□□□ -2.27
CUX1P39880 AC110491.1-201ENST00000562191 2010 ntBASIC0.89□□□□□ -2.27
CUX1P39880 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
CUX1P39880 RNU6-288P-201ENST00000363690 104 ntBASIC0.89□□□□□ -2.27
CUX1P39880 RNA5SP125-201ENST00000364843 120 ntBASIC0.89□□□□□ -2.27
CUX1P39880 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
CUX1P39880 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.89□□□□□ -2.27
CUX1P39880 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.89□□□□□ -2.27
CUX1P39880 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.89□□□□□ -2.27
CUX1P39880 MTND5P11-201ENST00000511037 1812 ntBASIC0.89□□□□□ -2.27
CUX1P39880 RNU4-23P-201ENST00000362839 140 ntBASIC0.89□□□□□ -2.27
CUX1P39880 RNU6-1187P-201ENST00000364771 110 ntBASIC0.89□□□□□ -2.27
CUX1P39880 SNORD26-201ENST00000384147 75 ntBASIC0.89□□□□□ -2.27
CUX1P39880 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CUX1P39880 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.89□□□□□ -2.27
CUX1P39880 RNF138P1-201ENST00000502765 546 ntBASIC0.89□□□□□ -2.27
CUX1P39880 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.89□□□□□ -2.27
CUX1P39880 SNORA48.10-201ENST00000516965 160 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms