Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.83□□□□□ -1.8
MSX2P35548 MIR7703-201ENST00000620784 77 ntBASIC3.83□□□□□ -1.8
MSX2P35548 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.83□□□□□ -1.8
MSX2P35548 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
MSX2P35548 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.83□□□□□ -1.8
MSX2P35548 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.83□□□□□ -1.8
MSX2P35548 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSX2P35548 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSX2P35548 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSX2P35548 AC106871.1-201ENST00000568324 3102 ntBASIC3.82□□□□□ -1.8
MSX2P35548 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.82□□□□□ -1.8
MSX2P35548 HSPA8P1-201ENST00000425843 1833 ntBASIC3.82□□□□□ -1.8
MSX2P35548 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSX2P35548 RNU6-600P-201ENST00000362524 99 ntBASIC3.82□□□□□ -1.8
MSX2P35548 Y_RNA.396-201ENST00000383949 103 ntBASIC3.82□□□□□ -1.8
MSX2P35548 SNORD73A-201ENST00000386062 65 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.82□□□□□ -1.8
MSX2P35548 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.82□□□□□ -1.8
MSX2P35548 HMGB1P9-201ENST00000429856 646 ntBASIC3.82□□□□□ -1.8
MSX2P35548 VDAC1P3-201ENST00000434069 851 ntBASIC3.82□□□□□ -1.8
MSX2P35548 RPL21P2-201ENST00000440049 481 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AL500522.2-201ENST00000448562 343 ntBASIC3.82□□□□□ -1.8
MSX2P35548 CHEK2P4-201ENST00000450340 246 ntBASIC3.82□□□□□ -1.8
MSX2P35548 PCNPP5-201ENST00000452246 481 ntBASIC3.82□□□□□ -1.8
MSX2P35548 RPS23P3-201ENST00000470993 430 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AC105758.1-201ENST00000506038 399 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AL592156.1-201ENST00000508758 304 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AC107222.1-201ENST00000510899 637 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.82□□□□□ -1.8
MSX2P35548 RNU6-388P-201ENST00000517012 105 ntBASIC3.82□□□□□ -1.8
MSX2P35548 RNU6-389P-201ENST00000517048 105 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AC069113.1-201ENST00000517763 267 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AP005902.1-201ENST00000521358 186 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AC104576.1-201ENST00000524225 88 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AC009643.1-201ENST00000532030 391 ntBASIC3.82□□□□□ -1.8
MSX2P35548 SNRPGP16-201ENST00000533275 226 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.82□□□□□ -1.8
MSX2P35548 AC022968.1-201ENST00000567372 442 ntBASIC3.82□□□□□ -1.8
MSX2P35548 LRRC37A5P-203ENST00000580181 585 ntBASIC3.82□□□□□ -1.8
MSX2P35548 MIR3690-201ENST00000580266 75 ntBASIC3.82□□□□□ -1.8
MSX2P35548 MIR5692A1-201ENST00000580523 69 ntBASIC3.82□□□□□ -1.8
MSX2P35548 BRDTP1-201ENST00000605735 677 ntBASIC3.82□□□□□ -1.8
MSX2P35548 RNU6-85P-201ENST00000605989 107 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AC005344.1-201ENST00000613391 459 ntBASIC3.82□□□□□ -1.8
MSX2P35548 AL031601.2-202ENST00000622650 282 ntBASIC3.82□□□□□ -1.8
MSX2P35548 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
MSX2P35548 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
MSX2P35548 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
MSX2P35548 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.82□□□□□ -1.8
MSX2P35548 ZNF285B-201ENST00000561698 1767 ntBASIC3.81□□□□□ -1.8
MSX2P35548 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSX2P35548 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSX2P35548 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
MSX2P35548 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
MSX2P35548 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.81□□□□□ -1.8
MSX2P35548 RNU6-596P-201ENST00000365395 98 ntBASIC3.81□□□□□ -1.8
MSX2P35548 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSX2P35548 HSPE1P8-201ENST00000406997 288 ntBASIC3.81□□□□□ -1.8
MSX2P35548 RNU6-174P-201ENST00000410406 106 ntBASIC3.81□□□□□ -1.8
MSX2P35548 RNU6-607P-201ENST00000411283 108 ntBASIC3.81□□□□□ -1.8
MSX2P35548 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.81□□□□□ -1.8
MSX2P35548 CYCSP33-201ENST00000414485 327 ntBASIC3.81□□□□□ -1.8
MSX2P35548 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.81□□□□□ -1.8
MSX2P35548 AL356387.2-201ENST00000422272 243 ntBASIC3.81□□□□□ -1.8
MSX2P35548 BX276092.3-201ENST00000424182 230 ntBASIC3.81□□□□□ -1.8
MSX2P35548 RPL21P66-201ENST00000426566 466 ntBASIC3.81□□□□□ -1.8
MSX2P35548 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSX2P35548 RNU6-840P-201ENST00000517275 65 ntBASIC3.81□□□□□ -1.8
MSX2P35548 AC131281.1-201ENST00000522984 164 ntBASIC3.81□□□□□ -1.8
MSX2P35548 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 MIR4644-201ENST00000579929 84 ntBASIC3.81□□□□□ -1.8
MSX2P35548 SNORD84-203ENST00000584275 78 ntBASIC3.81□□□□□ -1.8
MSX2P35548 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 AC005357.1-201ENST00000588399 301 ntBASIC3.81□□□□□ -1.8
MSX2P35548 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 BDH2P1-201ENST00000602288 736 ntBASIC3.81□□□□□ -1.8
MSX2P35548 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX2P35548 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.81□□□□□ -1.8
MSX2P35548 MIR6780A-201ENST00000615089 68 ntBASIC3.81□□□□□ -1.8
MSX2P35548 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.81□□□□□ -1.8
MSX2P35548 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.81□□□□□ -1.8
MSX2P35548 MIR4272-201ENST00000635924 64 ntBASIC3.81□□□□□ -1.8
MSX2P35548 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSX2P35548 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSX2P35548 MFSD8-242ENST00000641690 4199 ntBASIC3.81□□□□□ -1.8
MSX2P35548 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSX2P35548 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
MSX2P35548 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSX2P35548 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSX2P35548 AC126755.2-208ENST00000327792 462 ntBASIC3.8□□□□□ -1.8
MSX2P35548 AC138969.1-213ENST00000331436 462 ntBASIC3.8□□□□□ -1.8
MSX2P35548 RNU6-874P-201ENST00000362390 105 ntBASIC3.8□□□□□ -1.8
MSX2P35548 Y_RNA.257-201ENST00000364596 102 ntBASIC3.8□□□□□ -1.8
MSX2P35548 Y_RNA.424-201ENST00000384063 103 ntBASIC3.8□□□□□ -1.8
MSX2P35548 SNORA36C-201ENST00000384289 132 ntBASIC3.8□□□□□ -1.8
MSX2P35548 RNU6-472P-201ENST00000384299 107 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms