Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.96□□□□□ -1.94
MSH3P20585 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.96□□□□□ -1.94
MSH3P20585 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.96□□□□□ -1.94
MSH3P20585 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.96□□□□□ -1.94
MSH3P20585 RNU7-182P-201ENST00000459009 62 ntBASIC2.96□□□□□ -1.94
MSH3P20585 RNU7-63P-201ENST00000459054 62 ntBASIC2.96□□□□□ -1.94
MSH3P20585 RN7SL633P-201ENST00000488974 297 ntBASIC2.96□□□□□ -1.94
MSH3P20585 AC105417.1-201ENST00000514691 285 ntBASIC2.96□□□□□ -1.94
MSH3P20585 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.96□□□□□ -1.94
MSH3P20585 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.96□□□□□ -1.94
MSH3P20585 AC010653.1-201ENST00000571108 881 ntBASIC2.96□□□□□ -1.94
MSH3P20585 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.96□□□□□ -1.94
MSH3P20585 AC006504.3-201ENST00000586818 523 ntBASIC2.96□□□□□ -1.94
MSH3P20585 AC104763.2-201ENST00000604179 382 ntBASIC2.96□□□□□ -1.94
MSH3P20585 AC104458.1-201ENST00000608243 463 ntBASIC2.96□□□□□ -1.94
MSH3P20585 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.96□□□□□ -1.94
MSH3P20585 AC007318.2-201ENST00000620999 243 ntBASIC2.96□□□□□ -1.94
MSH3P20585 AC025034.2-201ENST00000623264 286 ntBASIC2.96□□□□□ -1.94
MSH3P20585 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
MSH3P20585 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
MSH3P20585 AC092435.3-201ENST00000565538 3654 ntBASIC2.96□□□□□ -1.94
MSH3P20585 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH3P20585 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
MSH3P20585 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.95□□□□□ -1.94
MSH3P20585 AC006020.1-201ENST00000420179 1854 ntBASIC2.95□□□□□ -1.94
MSH3P20585 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
MSH3P20585 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
MSH3P20585 SNORA62.1-201ENST00000364287 154 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
MSH3P20585 SNORA69-201ENST00000383895 132 ntBASIC2.95□□□□□ -1.94
MSH3P20585 Y_RNA.573-201ENST00000384763 105 ntBASIC2.95□□□□□ -1.94
MSH3P20585 SNORA48.5-201ENST00000391143 135 ntBASIC2.95□□□□□ -1.94
MSH3P20585 RNA5SP344-201ENST00000411081 104 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 AL356867.1-201ENST00000429623 299 ntBASIC2.95□□□□□ -1.94
MSH3P20585 MTND1P2-201ENST00000430604 821 ntBASIC2.95□□□□□ -1.94
MSH3P20585 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 CACYBPP2-201ENST00000453625 678 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH3P20585 RNU6-261P-201ENST00000459506 102 ntBASIC2.95□□□□□ -1.94
MSH3P20585 GMFBP1-201ENST00000467831 427 ntBASIC2.95□□□□□ -1.94
MSH3P20585 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.95□□□□□ -1.94
MSH3P20585 AC117440.1-201ENST00000474107 571 ntBASIC2.95□□□□□ -1.94
MSH3P20585 RPL31P60-201ENST00000478450 367 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AC233702.1-201ENST00000482905 502 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AL163973.1-201ENST00000484753 577 ntBASIC2.95□□□□□ -1.94
MSH3P20585 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.95□□□□□ -1.94
MSH3P20585 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 AC108078.2-201ENST00000510750 236 ntBASIC2.95□□□□□ -1.94
MSH3P20585 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 RNU6-927P-201ENST00000516199 100 ntBASIC2.95□□□□□ -1.94
MSH3P20585 MTND1P35-201ENST00000526739 508 ntBASIC2.95□□□□□ -1.94
MSH3P20585 OR5AL2P-201ENST00000532185 920 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH3P20585 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH3P20585 AL162413.1-201ENST00000603198 110 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AC174048.1-201ENST00000603389 144 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AP000907.4-201ENST00000604143 237 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AC002553.4-201ENST00000616896 331 ntBASIC2.95□□□□□ -1.94
MSH3P20585 AL354950.2-201ENST00000617939 290 ntBASIC2.95□□□□□ -1.94
MSH3P20585 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH3P20585 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH3P20585 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH3P20585 CUL1P1-201ENST00000509510 2425 ntBASIC2.95□□□□□ -1.94
MSH3P20585 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.95□□□□□ -1.94
MSH3P20585 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
MSH3P20585 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
MSH3P20585 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
MSH3P20585 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.94□□□□□ -1.94
MSH3P20585 CKAP2P1-201ENST00000555477 2049 ntBASIC2.94□□□□□ -1.94
MSH3P20585 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
MSH3P20585 Y_RNA.38-201ENST00000362617 102 ntBASIC2.94□□□□□ -1.94
MSH3P20585 Y_RNA.89-201ENST00000363031 102 ntBASIC2.94□□□□□ -1.94
MSH3P20585 Y_RNA.255-201ENST00000364581 97 ntBASIC2.94□□□□□ -1.94
MSH3P20585 RNU6-534P-201ENST00000364877 106 ntBASIC2.94□□□□□ -1.94
MSH3P20585 RNU1-140P-201ENST00000365040 165 ntBASIC2.94□□□□□ -1.94
MSH3P20585 SNORD115-7-201ENST00000365306 82 ntBASIC2.94□□□□□ -1.94
MSH3P20585 FAT1P1-201ENST00000406588 507 ntBASIC2.94□□□□□ -1.94
MSH3P20585 RNA5SP38-201ENST00000410750 119 ntBASIC2.94□□□□□ -1.94
MSH3P20585 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.94□□□□□ -1.94
MSH3P20585 RPL35AP12-201ENST00000425362 338 ntBASIC2.94□□□□□ -1.94
MSH3P20585 AC091390.3-201ENST00000426478 338 ntBASIC2.94□□□□□ -1.94
MSH3P20585 AC104332.2-201ENST00000429959 156 ntBASIC2.94□□□□□ -1.94
MSH3P20585 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.94□□□□□ -1.94
MSH3P20585 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.94□□□□□ -1.94
MSH3P20585 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.94□□□□□ -1.94
MSH3P20585 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.94□□□□□ -1.94
MSH3P20585 RPS29P15-201ENST00000458329 171 ntBASIC2.94□□□□□ -1.94
MSH3P20585 AC087588.1-201ENST00000462203 316 ntBASIC2.94□□□□□ -1.94
MSH3P20585 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.94□□□□□ -1.94
MSH3P20585 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.94□□□□□ -1.94
MSH3P20585 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.94□□□□□ -1.94
MSH3P20585 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.94□□□□□ -1.94
MSH3P20585 AC022080.3-201ENST00000544433 482 ntBASIC2.94□□□□□ -1.94
MSH3P20585 AC107016.2-201ENST00000547968 190 ntBASIC2.94□□□□□ -1.94
MSH3P20585 AL133241.1-201ENST00000556832 487 ntBASIC2.94□□□□□ -1.94
MSH3P20585 ATP5A1P2-202ENST00000616464 443 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms