Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC0.93□□□□□ -2.26
TNFP01375 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.93□□□□□ -2.26
TNFP01375 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.93□□□□□ -2.26
TNFP01375 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.93□□□□□ -2.26
TNFP01375 AL391813.1-201ENST00000603098 260 ntBASIC0.93□□□□□ -2.26
TNFP01375 MTCYBP22-201ENST00000603788 447 ntBASIC0.93□□□□□ -2.26
TNFP01375 AC123912.5-201ENST00000605470 343 ntBASIC0.93□□□□□ -2.26
TNFP01375 AC011374.2-201ENST00000607135 526 ntBASIC0.93□□□□□ -2.26
TNFP01375 AC016542.1-201ENST00000608259 493 ntBASIC0.93□□□□□ -2.26
TNFP01375 AC009233.1-201ENST00000616477 371 ntBASIC0.93□□□□□ -2.26
TNFP01375 AC024581.2-201ENST00000619986 252 ntBASIC0.93□□□□□ -2.26
TNFP01375 AC092608.3-201ENST00000625017 386 ntBASIC0.93□□□□□ -2.26
TNFP01375 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.93□□□□□ -2.26
TNFP01375 AC005539.1-201ENST00000443768 1479 ntBASIC0.92□□□□□ -2.26
TNFP01375 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
TNFP01375 Y_RNA.118-201ENST00000363300 101 ntBASIC0.92□□□□□ -2.26
TNFP01375 SNORA62.1-201ENST00000364287 154 ntBASIC0.92□□□□□ -2.26
TNFP01375 MIR421-201ENST00000365696 85 ntBASIC0.92□□□□□ -2.26
TNFP01375 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC0.92□□□□□ -2.26
TNFP01375 MIR135A2-201ENST00000384854 100 ntBASIC0.92□□□□□ -2.26
TNFP01375 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
TNFP01375 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.92□□□□□ -2.26
TNFP01375 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.92□□□□□ -2.26
TNFP01375 USP9YP35-201ENST00000435696 412 ntBASIC0.92□□□□□ -2.26
TNFP01375 CR769776.1-201ENST00000441254 787 ntBASIC0.92□□□□□ -2.26
TNFP01375 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.92□□□□□ -2.26
TNFP01375 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.92□□□□□ -2.26
TNFP01375 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.92□□□□□ -2.26
TNFP01375 RPS27P23-201ENST00000487608 251 ntBASIC0.92□□□□□ -2.26
TNFP01375 AC139453.3-201ENST00000493276 369 ntBASIC0.92□□□□□ -2.26
TNFP01375 AC008837.2-201ENST00000513076 418 ntBASIC0.92□□□□□ -2.26
TNFP01375 RNA5SP445-201ENST00000515889 115 ntBASIC0.92□□□□□ -2.26
TNFP01375 SCARNA15.2-201ENST00000516409 127 ntBASIC0.92□□□□□ -2.26
TNFP01375 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.92□□□□□ -2.26
TNFP01375 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.92□□□□□ -2.26
TNFP01375 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
TNFP01375 RPL21P5-201ENST00000554662 472 ntBASIC0.92□□□□□ -2.26
TNFP01375 AC019288.1-201ENST00000557918 224 ntBASIC0.92□□□□□ -2.26
TNFP01375 AC026271.5-201ENST00000577873 130 ntBASIC0.92□□□□□ -2.26
TNFP01375 AC018618.2-201ENST00000604770 446 ntBASIC0.92□□□□□ -2.26
TNFP01375 AC211469.2-201ENST00000605461 205 ntBASIC0.92□□□□□ -2.26
TNFP01375 UBE2Q2P6-201ENST00000612666 153 ntBASIC0.92□□□□□ -2.26
TNFP01375 AC099842.1-201ENST00000619919 596 ntBASIC0.92□□□□□ -2.26
TNFP01375 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.92□□□□□ -2.26
TNFP01375 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
TNFP01375 RNU6-670P-201ENST00000364312 104 ntBASIC0.91□□□□□ -2.26
TNFP01375 SNORA25.8-201ENST00000364831 128 ntBASIC0.91□□□□□ -2.26
TNFP01375 ZNF863P-201ENST00000426746 417 ntBASIC0.91□□□□□ -2.26
TNFP01375 AL512637.2-201ENST00000431287 1256 ntBASIC0.91□□□□□ -2.26
TNFP01375 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC0.91□□□□□ -2.26
TNFP01375 MTND1P33-201ENST00000446251 917 ntBASIC0.91□□□□□ -2.26
TNFP01375 AL590365.1-201ENST00000450788 243 ntBASIC0.91□□□□□ -2.26
TNFP01375 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.91□□□□□ -2.26
TNFP01375 OR2A41P-201ENST00000473586 105 ntBASIC0.91□□□□□ -2.26
TNFP01375 HIGD1AP6-201ENST00000521833 279 ntBASIC0.91□□□□□ -2.26
TNFP01375 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.91□□□□□ -2.26
TNFP01375 AL137100.2-201ENST00000555786 315 ntBASIC0.91□□□□□ -2.26
TNFP01375 AC093510.2-201ENST00000562820 896 ntBASIC0.91□□□□□ -2.26
TNFP01375 AL356432.3-201ENST00000568952 465 ntBASIC0.91□□□□□ -2.26
TNFP01375 MIR4422-201ENST00000581938 83 ntBASIC0.91□□□□□ -2.26
TNFP01375 AL031176.1-201ENST00000604554 466 ntBASIC0.91□□□□□ -2.26
TNFP01375 DUXAP10-204ENST00000612052 616 ntBASIC0.91□□□□□ -2.26
TNFP01375 MIR6788-201ENST00000618842 66 ntBASIC0.91□□□□□ -2.26
TNFP01375 MIR5739-201ENST00000619803 80 ntBASIC0.91□□□□□ -2.26
TNFP01375 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.91□□□□□ -2.26
TNFP01375 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
TNFP01375 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
TNFP01375 SNORA22-201ENST00000383907 134 ntBASIC0.9□□□□□ -2.27
TNFP01375 SNORA22C-201ENST00000384614 134 ntBASIC0.9□□□□□ -2.27
TNFP01375 SRIP3-201ENST00000413200 219 ntBASIC0.9□□□□□ -2.27
TNFP01375 AL160275.3-201ENST00000423876 471 ntBASIC0.9□□□□□ -2.27
TNFP01375 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.9□□□□□ -2.27
TNFP01375 AL354941.1-201ENST00000438600 464 ntBASIC0.9□□□□□ -2.27
TNFP01375 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.9□□□□□ -2.27
TNFP01375 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.9□□□□□ -2.27
TNFP01375 RFC5P1-201ENST00000454419 874 ntBASIC0.9□□□□□ -2.27
TNFP01375 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.9□□□□□ -2.27
TNFP01375 AC093677.1-201ENST00000514414 678 ntBASIC0.9□□□□□ -2.27
TNFP01375 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.9□□□□□ -2.27
TNFP01375 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.9□□□□□ -2.27
TNFP01375 CBX3P8-201ENST00000532412 525 ntBASIC0.9□□□□□ -2.27
TNFP01375 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.9□□□□□ -2.27
TNFP01375 AL445493.3-201ENST00000619568 477 ntBASIC0.9□□□□□ -2.27
TNFP01375 AL118508.4-201ENST00000624142 1176 ntBASIC0.9□□□□□ -2.27
TNFP01375 AL359854.1-201ENST00000614203 1594 ntBASIC0.9□□□□□ -2.27
TNFP01375 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.9□□□□□ -2.27
TNFP01375 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.9□□□□□ -2.27
TNFP01375 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.89□□□□□ -2.27
TNFP01375 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.89□□□□□ -2.27
TNFP01375 TEX21P-201ENST00000447107 1476 ntBASIC0.89□□□□□ -2.27
TNFP01375 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
TNFP01375 MIR373-201ENST00000362273 69 ntBASIC0.89□□□□□ -2.27
TNFP01375 RNU6-884P-201ENST00000363889 107 ntBASIC0.89□□□□□ -2.27
TNFP01375 MIR514A1-201ENST00000385133 98 ntBASIC0.89□□□□□ -2.27
TNFP01375 MIR618-201ENST00000385287 98 ntBASIC0.89□□□□□ -2.27
TNFP01375 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
TNFP01375 AC009310.1-201ENST00000414414 451 ntBASIC0.89□□□□□ -2.27
TNFP01375 BEND7P1-201ENST00000422058 457 ntBASIC0.89□□□□□ -2.27
TNFP01375 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC0.89□□□□□ -2.27
TNFP01375 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms