Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 LINC00933-203ENST00000559812 219 ntBASIC1.68□□□□□ -2.14
SGCEO43556 AL049838.1-201ENST00000563647 981 ntBASIC1.68□□□□□ -2.14
SGCEO43556 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.68□□□□□ -2.14
SGCEO43556 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.68□□□□□ -2.14
SGCEO43556 AC010928.2-201ENST00000588017 287 ntBASIC1.68□□□□□ -2.14
SGCEO43556 AC073544.2-201ENST00000601155 540 ntBASIC1.68□□□□□ -2.14
SGCEO43556 SNRPGP19-201ENST00000603826 189 ntBASIC1.68□□□□□ -2.14
SGCEO43556 AC009974.1-201ENST00000608881 455 ntBASIC1.68□□□□□ -2.14
SGCEO43556 YWHAEP7-203ENST00000622054 312 ntBASIC1.68□□□□□ -2.14
SGCEO43556 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SGCEO43556 ZNF355P-201ENST00000427301 3216 ntBASIC1.67□□□□□ -2.14
SGCEO43556 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
SGCEO43556 RNU6-512P-201ENST00000364438 103 ntBASIC1.67□□□□□ -2.14
SGCEO43556 U3.13-201ENST00000364804 214 ntBASIC1.67□□□□□ -2.14
SGCEO43556 RNA5SP88-201ENST00000365560 109 ntBASIC1.67□□□□□ -2.14
SGCEO43556 AC019129.1-201ENST00000403786 261 ntBASIC1.67□□□□□ -2.14
SGCEO43556 AL139397.2-201ENST00000404529 772 ntBASIC1.67□□□□□ -2.14
SGCEO43556 RNU2-20P-201ENST00000410425 191 ntBASIC1.67□□□□□ -2.14
SGCEO43556 RNA5SP489-201ENST00000410986 109 ntBASIC1.67□□□□□ -2.14
SGCEO43556 HMGB1P27-201ENST00000431429 603 ntBASIC1.67□□□□□ -2.14
SGCEO43556 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.67□□□□□ -2.14
SGCEO43556 OR6C5P-201ENST00000452388 923 ntBASIC1.67□□□□□ -2.14
SGCEO43556 AC092001.1-201ENST00000453012 261 ntBASIC1.67□□□□□ -2.14
SGCEO43556 MEMO1P3-201ENST00000459811 302 ntBASIC1.67□□□□□ -2.14
SGCEO43556 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.67□□□□□ -2.14
SGCEO43556 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.67□□□□□ -2.14
SGCEO43556 AC020699.1-201ENST00000505161 445 ntBASIC1.67□□□□□ -2.14
SGCEO43556 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.67□□□□□ -2.14
SGCEO43556 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.67□□□□□ -2.14
SGCEO43556 AL136520.1-202ENST00000555494 763 ntBASIC1.67□□□□□ -2.14
SGCEO43556 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
SGCEO43556 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.67□□□□□ -2.14
SGCEO43556 DPPA3P3-201ENST00000603842 430 ntBASIC1.67□□□□□ -2.14
SGCEO43556 AC092953.2-201ENST00000608000 699 ntBASIC1.67□□□□□ -2.14
SGCEO43556 AL773524.1-201ENST00000614065 229 ntBASIC1.67□□□□□ -2.14
SGCEO43556 PCMTD1P7-201ENST00000634506 357 ntBASIC1.67□□□□□ -2.14
SGCEO43556 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.66□□□□□ -2.14
SGCEO43556 RNU6-289P-201ENST00000364093 107 ntBASIC1.66□□□□□ -2.14
SGCEO43556 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SGCEO43556 RPS20P15-201ENST00000412792 311 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.66□□□□□ -2.14
SGCEO43556 PGBD4P6-201ENST00000421501 610 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.66□□□□□ -2.14
SGCEO43556 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.66□□□□□ -2.14
SGCEO43556 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.66□□□□□ -2.14
SGCEO43556 MTND6P13-201ENST00000443510 523 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.66□□□□□ -2.14
SGCEO43556 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.66□□□□□ -2.14
SGCEO43556 AC034222.1-201ENST00000494052 532 ntBASIC1.66□□□□□ -2.14
SGCEO43556 RPS29P21-201ENST00000496272 170 ntBASIC1.66□□□□□ -2.14
SGCEO43556 HMGB1P35-201ENST00000503360 598 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.66□□□□□ -2.14
SGCEO43556 SNORA4.4-201ENST00000515921 135 ntBASIC1.66□□□□□ -2.14
SGCEO43556 SNORA48.11-201ENST00000517015 89 ntBASIC1.66□□□□□ -2.14
SGCEO43556 RNU6-1183P-201ENST00000517054 60 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.66□□□□□ -2.14
SGCEO43556 AC233702.2-202ENST00000562547 291 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC026271.5-201ENST00000577873 130 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC021171.1-201ENST00000603137 706 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC084824.5-201ENST00000612009 413 ntBASIC1.66□□□□□ -2.14
SGCEO43556 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.66□□□□□ -2.14
SGCEO43556 AC008121.3-201ENST00000618726 433 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC104985.3-201ENST00000623479 597 ntBASIC1.66□□□□□ -2.14
SGCEO43556 AC116618.1-201ENST00000634617 774 ntBASIC1.66□□□□□ -2.14
SGCEO43556 U6.99-201ENST00000637524 83 ntBASIC1.66□□□□□ -2.14
SGCEO43556 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.65□□□□□ -2.14
SGCEO43556 SNORA63.3-201ENST00000362682 132 ntBASIC1.65□□□□□ -2.15
SGCEO43556 RNU6-1280P-201ENST00000365211 107 ntBASIC1.65□□□□□ -2.15
SGCEO43556 SNORA40.2-201ENST00000390847 128 ntBASIC1.65□□□□□ -2.15
SGCEO43556 RNA5SP450-201ENST00000411206 102 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AC127391.1-201ENST00000411737 98 ntBASIC1.65□□□□□ -2.15
SGCEO43556 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.65□□□□□ -2.15
SGCEO43556 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.65□□□□□ -2.15
SGCEO43556 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.65□□□□□ -2.15
SGCEO43556 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC1.65□□□□□ -2.15
SGCEO43556 IFNA20P-201ENST00000436840 528 ntBASIC1.65□□□□□ -2.15
SGCEO43556 RPL32P28-201ENST00000443577 397 ntBASIC1.65□□□□□ -2.15
SGCEO43556 RNU7-59P-201ENST00000459101 61 ntBASIC1.65□□□□□ -2.15
SGCEO43556 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.65□□□□□ -2.15
SGCEO43556 AC055855.1-201ENST00000489563 579 ntBASIC1.65□□□□□ -2.15
SGCEO43556 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC1.65□□□□□ -2.15
SGCEO43556 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC1.65□□□□□ -2.15
SGCEO43556 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.65□□□□□ -2.15
SGCEO43556 SNORA25.11-201ENST00000515935 105 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.65□□□□□ -2.15
SGCEO43556 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.65□□□□□ -2.15
SGCEO43556 PSMA3P-201ENST00000555485 635 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.65□□□□□ -2.15
SGCEO43556 DEFB122-202ENST00000569013 197 ntBASIC1.65□□□□□ -2.15
SGCEO43556 UBE2L4-201ENST00000587688 464 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.65□□□□□ -2.15
SGCEO43556 BNIP3P26-201ENST00000600827 554 ntBASIC1.65□□□□□ -2.15
SGCEO43556 RNU6-91P-201ENST00000607774 107 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AC087241.4-201ENST00000612441 480 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AC022202.1-201ENST00000613515 211 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AL512427.1-201ENST00000618593 349 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.65□□□□□ -2.15
SGCEO43556 AL158801.5-201ENST00000623123 465 ntBASIC1.65□□□□□ -2.15
SGCEO43556 AC138627.2-201ENST00000624202 601 ntBASIC1.65□□□□□ -2.15
SGCEO43556 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms