Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AC073343.1-201ENST00000328239 651 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AL512633.1-201ENST00000399931 655 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 MIR888-201ENST00000401186 77 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AL359511.1-201ENST00000402970 211 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 DPH3P2-201ENST00000422618 250 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 GPM6BP2-201ENST00000432046 144 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 SNRPEP9-201ENST00000436794 238 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 MTND6P13-201ENST00000443510 523 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 HIGD1AP2-201ENST00000446367 280 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 GPM6BP1-201ENST00000446387 144 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 RNU6-1092P-201ENST00000516955 87 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 CKS1BP7-201ENST00000522230 235 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 ARL2BPP2-201ENST00000550907 489 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AC009163.5-201ENST00000575421 637 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 DUXAP4-201ENST00000603046 613 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 MTND5P7-201ENST00000413558 1798 ntBASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM4Q9ULL8 SNORD56.2-201ENST00000363242 71 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 RNU1-105P-201ENST00000363470 161 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 RNA5SP210-201ENST00000391034 120 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC127391.1-201ENST00000411737 98 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 HMGN1P14-201ENST00000412459 517 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 MTND1P28-201ENST00000435623 950 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC233702.1-201ENST00000482905 502 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 ARL4AP2-201ENST00000507378 601 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC091965.2-201ENST00000512324 613 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 SNORA9.3-201ENST00000516383 129 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC005951.1-201ENST00000576706 485 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 NRBF2P1-201ENST00000587407 859 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 BNIP3P9-201ENST00000603714 553 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC004805.2-201ENST00000605382 482 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AL133173.2-201ENST00000614270 90 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AP001506.1-201ENST00000615444 211 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 CR381653.2-201ENST00000624041 768 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 MTND5P19-201ENST00000424872 1794 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 FGF7P2-201ENST00000332473 296 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 HSPE1P11-201ENST00000339579 310 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 RNU2-36P-201ENST00000410361 191 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 ELOCP4-201ENST00000420090 333 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 RPL7P5-201ENST00000471472 736 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 RPL39P36-201ENST00000490784 156 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 RN7SKP24-201ENST00000515888 284 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 CLIC4P2-201ENST00000601934 717 ntBASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SHROOM4Q9ULL8 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 RNU6-14P-201ENST00000384630 106 ntBASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 AL590004.2-201ENST00000404787 371 ntBASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 AL365204.3-201ENST00000612448 685 ntBASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 AL589994.2-201ENST00000621124 579 ntBASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 SNORA50A-202ENST00000629536 136 ntBASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC4.8□□□□□ -1.64
SHROOM4Q9ULL8 AL161431.1-201ENST00000618966 4205 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 API5P2-201ENST00000397055 1498 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 RNU6-288P-201ENST00000363690 104 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 RNY4P34-201ENST00000364779 95 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 USP9YP20-201ENST00000419224 558 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AL136380.1-201ENST00000447970 162 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 CECR9-201ENST00000453421 199 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AC103975.1-201ENST00000482506 483 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 RNU2-46P-201ENST00000517038 113 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AC060788.1-201ENST00000521318 469 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 MIR3186-201ENST00000577404 85 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AL161798.1-201ENST00000604630 131 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AP003399.1-201ENST00000637534 361 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 AC099654.13-201ENST00000639774 207 ntBASIC4.79□□□□□ -1.64
SHROOM4Q9ULL8 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms