Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC103810.1-201ENST00000579873 453 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC011939.3-201ENST00000613686 466 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 MIR3199-2-201ENST00000636243 86 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 MTND5P42-201ENST00000637720 498 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 LRRC77P-213ENST00000637727 880 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC099654.13-201ENST00000639774 207 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 NACAP2-201ENST00000318548 624 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 SNORD56.2-201ENST00000363242 71 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 RNU4-1-201ENST00000363925 141 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 RNU6-188P-201ENST00000364207 107 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 SNORA68.1-201ENST00000364537 132 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 RNU6-658P-201ENST00000384606 106 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 SNORA67.4-201ENST00000384688 142 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 SNORA26.8-201ENST00000391306 124 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 RPL7P10-201ENST00000417407 739 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC007283.2-201ENST00000424739 197 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 MTATP6P17-201ENST00000431030 672 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 USP9YP15-201ENST00000442391 422 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AL513328.1-201ENST00000446460 224 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC093899.1-201ENST00000457984 376 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 RPL23AP45-201ENST00000476406 468 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC139453.3-201ENST00000493276 369 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 Y_RNA.672-201ENST00000516289 104 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC009977.1-201ENST00000586015 570 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 AC078899.3-201ENST00000599065 212 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 Z99571.1-201ENST00000636677 394 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
LHX3Q9UBR4 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.5□□□□□ -2.01
LHX3Q9UBR4 MTND4P35-201ENST00000604257 1375 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC010889.1-201ENST00000566193 2666 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC073343.1-201ENST00000328239 651 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 SNORD56.5-201ENST00000364281 72 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 XGY1-201ENST00000381172 446 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AL359511.1-201ENST00000402970 211 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 RNU2-8P-201ENST00000410727 190 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 NPM1P11-201ENST00000417106 855 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 CYCSP46-201ENST00000423569 204 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AL591212.2-201ENST00000433923 257 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 RPL36AP6-201ENST00000435770 321 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 OSTCP8-201ENST00000445117 448 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 TAF9P1-201ENST00000445421 515 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 TAF9P2-201ENST00000454958 515 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 RPL23AP70-201ENST00000483361 460 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC098591.2-201ENST00000510152 315 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 OSBPL9P5-201ENST00000542581 171 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC007151.1-201ENST00000572774 483 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 BNIP3P8-201ENST00000597863 560 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AP002360.4-201ENST00000606980 481 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC022893.3-201ENST00000607665 437 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 AC078883.4-201ENST00000623218 367 ntBASIC2.49□□□□□ -2.01
LHX3Q9UBR4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.49□□□□□ -2.01
LHX3Q9UBR4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RNU4-82P-201ENST00000362443 140 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RNU5E-1-201ENST00000362477 120 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RNU4-21P-201ENST00000362802 126 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RN7SKP226-201ENST00000364912 300 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 MIR301A-201ENST00000385261 86 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RPL21P75-201ENST00000396599 483 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RPL21P28-201ENST00000401418 483 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AL592114.1-201ENST00000403842 483 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AL162578.1-201ENST00000406202 378 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 ELOCP4-201ENST00000420090 333 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RPS15AP7-201ENST00000439294 405 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 DPPA3P1-201ENST00000448050 469 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 AC098826.2-201ENST00000452011 651 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RPL21P39-201ENST00000463605 483 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 TRBV1-201ENST00000476502 284 ntBASIC2.48□□□□□ -2.01
LHX3Q9UBR4 RPL21P93-201ENST00000480465 489 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms