Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 RNU5A-2P-201ENST00000384337 116 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 Y_RNA.500-201ENST00000384466 111 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC023141.4-201ENST00000412031 328 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 RAC1P6-201ENST00000423911 575 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC104651.1-201ENST00000427559 735 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 RPS6P15-201ENST00000431996 751 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AP000852.1-201ENST00000472460 573 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC109486.1-201ENST00000486833 374 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 RNA5SP24-201ENST00000516478 95 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AP003122.4-201ENST00000530980 758 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 GLYCAM1-201ENST00000546596 285 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AL512310.1-201ENST00000548639 172 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC078814.3-201ENST00000553036 491 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC105137.2-201ENST00000569073 466 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 MIR5194-201ENST00000582634 120 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 HMGN1P30-201ENST00000589286 268 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 RNU6-87P-201ENST00000607561 108 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC138749.5-201ENST00000611461 208 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC116165.2-201ENST00000616705 206 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC092140.2-201ENST00000618027 521 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AL589994.2-201ENST00000621124 579 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC091931.1-201ENST00000623488 728 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 AC135776.4-201ENST00000624300 1904 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 MTND5P29-201ENST00000458676 1807 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AL591416.1-201ENST00000404015 867 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC107081.1-201ENST00000414975 361 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 ZNF90P2-204ENST00000419323 1075 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 SUMO1P4-201ENST00000429430 302 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 MED14P1-201ENST00000430517 648 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 GPM6BP2-201ENST00000432046 144 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 HIGD1AP2-201ENST00000446367 280 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 GPM6BP1-201ENST00000446387 144 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC105252.1-201ENST00000503089 286 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC010587.1-201ENST00000505809 469 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 RNA5SP402-201ENST00000517148 110 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC026407.1-201ENST00000518369 204 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC022634.1-201ENST00000520765 532 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 MTCYBP20-201ENST00000524239 1129 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 SUB1P1-201ENST00000524415 382 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC022878.1-201ENST00000530684 149 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AC112191.3-201ENST00000604371 277 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 AL359999.1-201ENST00000604513 294 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 MIR6766-201ENST00000622641 72 ntBASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
VPS54Q9P1Q0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 RNA5SP393-201ENST00000363423 117 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 RNU5E-6P-201ENST00000365574 115 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 RNU2-49P-201ENST00000410666 184 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC006366.1-201ENST00000422002 759 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC007283.2-201ENST00000424739 197 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 SKA2P1-201ENST00000425592 390 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC092447.3-201ENST00000426027 686 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AL589872.1-201ENST00000426602 288 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 HMGB1P27-201ENST00000431429 603 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 MYL8P-204ENST00000431574 518 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 RPS15AP5-201ENST00000436276 388 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 MTND4P25-201ENST00000441039 533 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC128713.1-201ENST00000471495 306 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC139453.3-201ENST00000493276 369 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC008716.1-201ENST00000511084 513 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC113155.1-201ENST00000511141 769 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 RNA5SP337-201ENST00000517007 109 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AL359212.1-201ENST00000556608 614 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms