| CHCHD3 | Q9NX63 | RNY4P34-201 | ENST00000364779 | 95 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-39P-201 | ENST00000384344 | 107 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | SNORA40C-201 | ENST00000391285 | 128 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC005162.2-201 | ENST00000411479 | 578 nt | TSL 4 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MTND3P17-201 | ENST00000416968 | 344 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AL138737.1-202 | ENST00000418834 | 876 nt | TSL 3 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | FABP5P13-201 | ENST00000452144 | 328 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RPL21P41-201 | ENST00000459863 | 264 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | LINC02077-201 | ENST00000465795 | 409 nt | TSL 3 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC023794.1-201 | ENST00000504210 | 403 nt | TSL 2 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC110794.1-201 | ENST00000505816 | 425 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC108078.2-201 | ENST00000510750 | 236 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC108727.1-201 | ENST00000513802 | 393 nt | TSL 2 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | Y_RNA.689-201 | ENST00000516589 | 107 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-572P-201 | ENST00000516724 | 80 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC009902.1-201 | ENST00000519351 | 183 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC103726.1-201 | ENST00000520785 | 474 nt | TSL 2 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC060788.1-201 | ENST00000521318 | 469 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | PSMA2P1-201 | ENST00000526365 | 646 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | OR5B19P-201 | ENST00000531766 | 928 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AP000462.2-203 | ENST00000540545 | 715 nt | TSL 5 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC009137.1-201 | ENST00000562790 | 260 nt | TSL 3 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC120045.1-201 | ENST00000563502 | 251 nt | TSL 3 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC139426.2-201 | ENST00000568289 | 251 nt | TSL 3 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR4429-201 | ENST00000580105 | 73 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR2682-201 | ENST00000580305 | 110 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR5694-201 | ENST00000581190 | 76 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR4444-1-201 | ENST00000581696 | 74 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR4444-2-201 | ENST00000584390 | 74 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | LINC02210-208 | ENST00000585118 | 546 nt | TSL 1 (best) BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC090578.1-201 | ENST00000604955 | 591 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AL359962.2-201 | ENST00000610044 | 303 nt | TSL 5 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | IL6ST-201 | ENST00000336909 | 8776 nt | APPRIS P1 TSL 2 BASIC | 2.76 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | CCDC82-201 | ENST00000278520 | 2941 nt | APPRIS P2 TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MTND5P17-201 | ENST00000418405 | 1603 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | PCM1-222 | ENST00000524226 | 5955 nt | TSL 1 (best) BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-461P-201 | ENST00000364195 | 107 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-108P-201 | ENST00000365558 | 107 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-748P-201 | ENST00000384648 | 107 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | SNORD15B-201 | ENST00000384714 | 146 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | SNORA80E-201 | ENST00000384744 | 137 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR34B-201 | ENST00000385076 | 84 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR670-201 | ENST00000390142 | 98 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | BCL2L15-203 | ENST00000393320 | 276 nt | TSL 1 (best) BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-1025P-201 | ENST00000410629 | 104 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-248P-201 | ENST00000410720 | 107 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AL445123.1-201 | ENST00000422023 | 446 nt | TSL 2 BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | PTGES3P4-201 | ENST00000426243 | 356 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC093106.2-201 | ENST00000428212 | 385 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | GCA-203 | ENST00000429691 | 824 nt | TSL 3 BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC104850.1-201 | ENST00000435940 | 476 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | GAPDHP17-201 | ENST00000449858 | 1001 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC022364.2-201 | ENST00000457963 | 554 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC004924.1-201 | ENST00000480160 | 781 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RN7SL20P-201 | ENST00000488827 | 297 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC139453.3-201 | ENST00000493276 | 369 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | LAMTOR3P2-201 | ENST00000504479 | 232 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC109329.2-201 | ENST00000519658 | 482 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | OR5BN1P-201 | ENST00000532955 | 829 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | LINC00933-203 | ENST00000559812 | 219 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | SLC12A1-210 | ENST00000561031 | 735 nt | TSL 2 BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC012414.6-201 | ENST00000568241 | 401 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR3167-201 | ENST00000579623 | 85 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | OR1M4P-201 | ENST00000589199 | 287 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC060766.3-201 | ENST00000591442 | 263 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | BNIP3P22-201 | ENST00000593399 | 556 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC068790.2-201 | ENST00000602601 | 557 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | SEPT7P9-203 | ENST00000604116 | 343 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AL158063.1-201 | ENST00000615349 | 536 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AL355365.1-201 | ENST00000616480 | 294 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC004520.1-201 | ENST00000608362 | 1413 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | LMBRD1-201 | ENST00000370570 | 2099 nt | TSL 1 (best) BASIC | 2.75 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | PLCZ1-209 | ENST00000539875 | 1398 nt | TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RGS18-201 | ENST00000367460 | 2150 nt | APPRIS P1 TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | ZBTB26-202 | ENST00000373656 | 4443 nt | APPRIS P1 TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | CHD1-201 | ENST00000284049 | 6457 nt | APPRIS P1 TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MLIP-AS1-201 | ENST00000434196 | 1534 nt | TSL 2 BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | ZFYVE16-202 | ENST00000505560 | 6599 nt | APPRIS P1 TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | ZBED5-201 | ENST00000413761 | 2512 nt | APPRIS P1 TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | ACTR6-212 | ENST00000552376 | 1659 nt | TSL 5 BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | MIR412-201 | ENST00000362142 | 91 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-179P-201 | ENST00000363350 | 107 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-169P-201 | ENST00000365336 | 107 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU1-52P-201 | ENST00000384190 | 164 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-1072P-201 | ENST00000384703 | 107 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-19P-201 | ENST00000384718 | 107 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RNU6-443P-201 | ENST00000384780 | 107 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC010731.3-201 | ENST00000415029 | 566 nt | TSL 4 BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AP003025.1-201 | ENST00000421650 | 149 nt | TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC093843.1-201 | ENST00000424395 | 512 nt | TSL 2 BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AP001136.1-201 | ENST00000425058 | 635 nt | TSL 2 BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | HMGN2P31-201 | ENST00000432430 | 273 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | GPR143P-201 | ENST00000434155 | 205 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AL353706.1-201 | ENST00000436728 | 494 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | AC009296.1-201 | ENST00000443146 | 155 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | NDUFB1P2-201 | ENST00000449477 | 176 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RPS27AP8-201 | ENST00000452665 | 445 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | LINC01766-201 | ENST00000453968 | 362 nt | TSL 3 BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | SLC16A12-AS1-202 | ENST00000454270 | 478 nt | TSL 2 BASIC | 2.74 | □□□□□ -1.97 | | |
| CHCHD3 | Q9NX63 | RN7SL807P-201 | ENST00000470923 | 297 nt | BASIC | 2.74 | □□□□□ -1.97 | | |