Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 TRAV28-201ENST00000557548 323 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 AC044792.1-201ENST00000593294 196 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 AC113139.1-201ENST00000605049 239 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 SNORD39.4-201ENST00000620099 78 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 AC090574.1-201ENST00000623186 233 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 AC066616.2-201ENST00000559334 1481 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.33-201ENST00000362591 102 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.384-201ENST00000383909 102 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 MIR548K-201ENST00000408406 116 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 MIR548F5-201ENST00000408421 86 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AL158156.1-201ENST00000422509 473 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 CECR9-201ENST00000453421 199 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 HMGN1P13-201ENST00000505795 138 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 COPS8P3-201ENST00000526024 482 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AC008011.1-201ENST00000545989 227 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 POLR3GP2-201ENST00000588366 668 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AC023043.2-201ENST00000589678 1026 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AC002044.1-201ENST00000606707 158 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.79□□□□□ -1.8
TDP1Q9NUW8 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.79□□□□□ -1.8
TDP1Q9NUW8 AP001486.2-201ENST00000561652 5113 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 MTND5P1-201ENST00000445440 1375 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 FRG1CP-201ENST00000358464 769 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.135-201ENST00000363439 95 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RNA5SP50-201ENST00000363731 107 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.212-201ENST00000364177 102 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RNU6-266P-201ENST00000364225 107 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RNU6-395P-201ENST00000365662 106 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.387-201ENST00000383918 102 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 SNORA75B-201ENST00000384053 137 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.480-201ENST00000384364 102 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RNU6-1179P-201ENST00000384667 107 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RNU6-1011P-201ENST00000384668 107 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RNU6-1197P-201ENST00000391183 107 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RPL23AP69-201ENST00000431134 458 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.632-201ENST00000459189 102 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 TRBV12-2-201ENST00000489763 344 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AC008716.1-201ENST00000511084 513 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 NDUFB4P9-201ENST00000511646 388 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 SNORA25.17-201ENST00000517184 124 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 RNA5SP454-201ENST00000517231 127 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 MIR4790-201ENST00000577799 79 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 LRRC37A5P-203ENST00000580181 585 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 MIR7851-201ENST00000610611 160 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AL138726.1-201ENST00000614873 333 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AL031601.2-202ENST00000622650 282 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 AC099654.10-201ENST00000640395 161 ntBASIC3.78□□□□□ -1.8
TDP1Q9NUW8 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.78□□□□□ -1.8
TDP1Q9NUW8 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AC073346.2-201ENST00000624724 2058 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 SNORD116-11-201ENST00000383882 92 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 SNORA9-201ENST00000384215 133 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms