Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ELOCP4-201ENST00000420090 333 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 PIGFP2-201ENST00000421400 651 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.9□□□□□ -1.95
USP28Q96RU2 PPP1R11P2-201ENST00000423543 382 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.9□□□□□ -1.95
USP28Q96RU2 MTND1P1-201ENST00000445453 368 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU7-59P-201ENST00000459101 61 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 KC877373.1-201ENST00000479066 408 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU6-506P-201ENST00000516553 94 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU6-445P-201ENST00000516949 107 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC087883.1-201ENST00000551882 391 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.9□□□□□ -1.95
USP28Q96RU2 AC005951.2-201ENST00000576282 495 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.9□□□□□ -1.95
USP28Q96RU2 NRBF2P1-201ENST00000587407 859 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.9□□□□□ -1.95
USP28Q96RU2 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.9□□□□□ -1.95
USP28Q96RU2 AC245014.2-201ENST00000603689 287 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AL391646.1-201ENST00000603860 190 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC246785.4-201ENST00000605374 287 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC007619.2-201ENST00000605743 379 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.9□□□□□ -1.95
USP28Q96RU2 AC126118.1-201ENST00000607744 628 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 TUG1_2.1-201ENST00000614234 87 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 MIR6130-201ENST00000619419 109 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.9□□□□□ -1.95
USP28Q96RU2 AC110079.1-202ENST00000635213 138 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
USP28Q96RU2 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.9□□□□□ -1.95
USP28Q96RU2 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
USP28Q96RU2 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP28Q96RU2 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP28Q96RU2 DEFB108F-201ENST00000344638 222 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 Y_RNA.159-201ENST00000363674 87 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP28Q96RU2 Y_RNA.409-201ENST00000383990 98 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 RNU6-1197P-201ENST00000391183 107 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC068050.1-201ENST00000394891 380 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 MTND1P21-201ENST00000412991 285 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC093106.2-201ENST00000428212 385 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC133104.1-201ENST00000429100 218 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.89□□□□□ -1.95
USP28Q96RU2 MTATP6P30-201ENST00000443540 664 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC093899.1-201ENST00000457984 376 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 SNORD109B-201ENST00000458961 67 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 SNORD109A-201ENST00000459128 67 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AL049714.1-201ENST00000466686 347 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.89□□□□□ -1.95
USP28Q96RU2 SCARNA24.1-201ENST00000516465 137 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC090572.1-201ENST00000519251 160 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC124947.2-202ENST00000552735 133 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.89□□□□□ -1.95
USP28Q96RU2 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.89□□□□□ -1.95
USP28Q96RU2 MIR3200-201ENST00000580767 85 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.89□□□□□ -1.95
USP28Q96RU2 BNIP3P33-201ENST00000598912 569 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC010620.2-201ENST00000600135 313 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC007684.1-201ENST00000609671 477 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AC093838.1-201ENST00000613014 469 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 AL161629.2-201ENST00000615347 275 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 MIR6863-201ENST00000636112 90 ntBASIC2.89□□□□□ -1.95
USP28Q96RU2 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP28Q96RU2 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.89□□□□□ -1.95
USP28Q96RU2 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
USP28Q96RU2 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USP28Q96RU2 Y_RNA.6-201ENST00000362350 114 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 RNU6-511P-201ENST00000363496 107 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 Y_RNA.372-201ENST00000365599 102 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 Y_RNA.381-201ENST00000365666 102 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 RNU6-76P-201ENST00000384060 104 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 SNORA9-201ENST00000384215 133 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.88□□□□□ -1.95
USP28Q96RU2 AL109755.1-201ENST00000401791 649 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 FO393413.1-201ENST00000402892 195 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 RNU6-648P-201ENST00000410190 107 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 RNU4-55P-201ENST00000410731 137 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 RNA5SP492-201ENST00000411330 114 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AL513477.1-202ENST00000417061 214 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.88□□□□□ -1.95
USP28Q96RU2 MTCO2P19-201ENST00000427513 598 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 FCF1P1-201ENST00000432690 571 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AC092573.2-201ENST00000434546 243 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 CYCSP32-201ENST00000440548 321 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.88□□□□□ -1.95
USP28Q96RU2 AC132479.1-201ENST00000449160 144 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms