Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 FABP5P15-201ENST00000453566 214 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 DYNLL1P5-201ENST00000467158 270 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 RPL30P6-201ENST00000475925 342 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 RN7SKP132-201ENST00000516001 208 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC060788.1-201ENST00000521318 469 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 GTF3AP2-201ENST00000557014 266 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 PCMTD1P2-201ENST00000565017 355 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 MIR3118-1-201ENST00000581787 76 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 NIFKP6-201ENST00000598115 845 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AP000860.1-201ENST00000605250 559 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 SNORD14A-201ENST00000606526 91 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL031775.1-201ENST00000607014 887 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC107294.1-201ENST00000609524 467 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 MIR7844-201ENST00000616161 122 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC025048.6-202ENST00000627667 438 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS39Q96JC1 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS39Q96JC1 UBE2L2-201ENST00000254302 429 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 SNORA80A-201ENST00000363922 136 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 NDUFB4P4-201ENST00000404822 243 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AL365203.2-201ENST00000423444 196 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 BX276092.3-201ENST00000424182 230 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC104651.1-201ENST00000427559 735 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC093106.2-201ENST00000428212 385 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 RPL30P4-201ENST00000429309 333 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 FCF1P1-201ENST00000432690 571 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 FABP5P14-201ENST00000437273 393 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AL590365.1-201ENST00000450788 243 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC073901.1-201ENST00000462471 408 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC119751.5-201ENST00000514077 770 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 MIR892C-201ENST00000516410 77 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS39Q96JC1 MIR3146-201ENST00000580367 79 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC091152.3-201ENST00000604227 325 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC092608.2-201ENST00000624427 218 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 AC097520.1-201ENST00000624435 385 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS39Q96JC1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VPS39Q96JC1 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.51□□□□□ -2.01
VPS39Q96JC1 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS39Q96JC1 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS39Q96JC1 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC080100.1-201ENST00000624239 5356 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS39Q96JC1 RNU5F-7P-201ENST00000363696 115 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 RNY3P13-201ENST00000365542 102 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 RNU6-658P-201ENST00000384606 106 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 U6atac.2-201ENST00000408644 118 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 AL356583.2-201ENST00000426536 280 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 HMGB1P27-201ENST00000431429 603 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 MTND3P7-201ENST00000474435 343 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 RNU6-703P-201ENST00000516946 107 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC022616.6-201ENST00000520479 119 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 DEFB108A-201ENST00000530110 222 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC106782.4-201ENST00000568264 210 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 MYL12BP1-201ENST00000569826 507 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 AL033523.1-201ENST00000605153 153 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS39Q96JC1 MIR6895-201ENST00000613497 78 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC022079.1-201ENST00000621546 602 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 AC091953.2-201ENST00000623979 160 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 PISRT1-201ENST00000626175 531 ntBASIC2.5□□□□□ -2.01
VPS39Q96JC1 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS39Q96JC1 AL359854.1-201ENST00000614203 1594 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC004944.1-201ENST00000517807 3059 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS39Q96JC1 RNA5SP456-201ENST00000364002 114 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 RNU5A-8P-201ENST00000364102 114 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 SNORA3A-201ENST00000364113 130 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms