Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC091152.3-201ENST00000604227 325 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 MIR98-201ENST00000606724 119 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 AC093732.2-201ENST00000607950 274 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 MIR6134-201ENST00000617606 109 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
SKA1Q96BD8 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SKA1Q96BD8 MTND5P30-201ENST00000452896 1731 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 ASNSP3-201ENST00000451989 1306 ntBASIC3.21□□□□□ -1.89
SKA1Q96BD8 Y_RNA.22-201ENST00000362492 102 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 Y_RNA.500-201ENST00000384466 111 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 RNU6-297P-201ENST00000384636 107 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 RNU6-195P-201ENST00000411352 109 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 BMS1P22-201ENST00000414726 313 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 OR51A5P-201ENST00000415429 942 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC245054.2-201ENST00000415639 319 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC009518.2-201ENST00000418056 731 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 ELOCP23-201ENST00000452014 332 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC092001.1-201ENST00000453012 261 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC126389.1-201ENST00000477436 290 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC116562.3-201ENST00000506136 177 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 Y_RNA.695-201ENST00000516715 107 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 RNU6-1220P-201ENST00000517126 108 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 MTND2P38-201ENST00000522536 667 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 PSMA2P1-201ENST00000526365 646 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC068587.5-201ENST00000528506 175 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA1Q96BD8 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 MIR3117-201ENST00000584034 78 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 OR2AS2P-201ENST00000606902 342 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 AL158063.1-201ENST00000615349 536 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC018692.3-201ENST00000623929 123 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 AC026422.1-201ENST00000623961 452 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA1Q96BD8 CDC27P3-201ENST00000635418 1910 ntBASIC3.21□□□□□ -1.9
SKA1Q96BD8 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SKA1Q96BD8 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 ELL2P3-201ENST00000457883 1602 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SKA1Q96BD8 RNU6-1280P-201ENST00000365211 107 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 RNU6-248P-201ENST00000410720 107 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 BX682237.1-201ENST00000415016 335 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 C1DP2-201ENST00000418167 426 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 GPR143P-201ENST00000434155 205 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 RPS20P5-201ENST00000434808 360 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 AL445687.1-201ENST00000439946 251 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 AC090572.1-201ENST00000519251 160 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 OR5BN1P-201ENST00000532955 829 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 AC098848.2-201ENST00000588023 330 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 AL022154.1-201ENST00000604698 785 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 AC064872.1-201ENST00000604823 1072 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 uc_338.14-201ENST00000613162 166 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 AC091903.1-201ENST00000624322 454 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 AL157786.1-207ENST00000627771 695 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 LRRC77P-213ENST00000637727 880 ntBASIC3.2□□□□□ -1.9
SKA1Q96BD8 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
SKA1Q96BD8 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SKA1Q96BD8 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 CISD1P1-201ENST00000393907 327 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 UBE2V1P2-201ENST00000397758 440 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 MTND3P17-201ENST00000416968 344 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AL160275.3-201ENST00000423876 471 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AL353706.1-201ENST00000436728 494 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 AL590639.1-201ENST00000456484 337 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC023194.1-201ENST00000493084 308 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 RNU6-581P-201ENST00000516214 105 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 RPPH1-2P-201ENST00000516688 293 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 RANP3-201ENST00000530970 276 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC090616.3-201ENST00000582184 217 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms