Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC055855.1-201ENST00000489563 579 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC018437.1-201ENST00000492214 406 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 RPL23AP94-201ENST00000512518 302 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 SNORA3.4-201ENST00000515969 96 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AP003461.1-201ENST00000528866 78 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 RPS3AP4-201ENST00000555161 764 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC008015.1-201ENST00000555505 465 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 CYCSP39-201ENST00000565821 309 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 ROCK1P1-201ENST00000573767 549 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC110760.3-201ENST00000598794 467 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AL031281.1-201ENST00000604049 488 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC068276.1-201ENST00000605793 379 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC007671.2-201ENST00000637344 619 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 RNY4P24-201ENST00000362735 96 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-1200P-201ENST00000384162 107 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 NDUFS5P1-201ENST00000405668 289 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AL355497.1-201ENST00000406262 551 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 PGBD4P3-201ENST00000440731 581 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 MTND2P22-201ENST00000444325 1033 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AL122001.1-201ENST00000457027 370 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 HIGD1AP13-201ENST00000509878 289 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AF213884.2-201ENST00000510417 903 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 MTCYBP43-201ENST00000513621 740 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-759P-201ENST00000516740 103 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 MIR4635-201ENST00000583759 79 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 MIR6840-201ENST00000611937 71 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AC079248.2-201ENST00000623779 326 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 U6.99-201ENST00000637524 83 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 TEX21P-201ENST00000447107 1476 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 AP006437.1-201ENST00000641440 3685 ntBASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
ZNF540Q8NDQ6 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-723P-201ENST00000383973 107 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 SNORD116-2-201ENST00000384274 95 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 SNORD116-6-201ENST00000384711 96 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 RNY3P9-201ENST00000384727 106 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 MIR144-201ENST00000384886 86 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-817P-201ENST00000391083 104 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AL139397.2-201ENST00000404529 772 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC098592.1-201ENST00000419352 333 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC093106.2-201ENST00000428212 385 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 BRK1P2-201ENST00000442875 223 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 RPL23AP35-201ENST00000451906 501 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 CYP2C59P-201ENST00000457790 269 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 RNU7-125P-201ENST00000458760 62 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-953P-201ENST00000459154 107 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AP001324.2-201ENST00000461163 319 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC117503.1-201ENST00000472241 394 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 RPS29P26-201ENST00000477483 171 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 CKS1BP2-201ENST00000497342 240 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC008526.1-201ENST00000509149 338 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC010486.3-201ENST00000511602 785 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC118273.2-201ENST00000532092 465 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC109446.2-201ENST00000567872 497 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC002400.1-201ENST00000569310 726 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 MIR5694-201ENST00000581190 76 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 MIR4293-201ENST00000584305 78 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 MIR4298-201ENST00000584380 73 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 NRBF2P1-201ENST00000587407 859 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC073544.2-201ENST00000601155 540 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AL358072.1-201ENST00000604156 575 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AL033523.1-201ENST00000605153 153 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms