Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
COL4A3Q01955 AL137003.2-201ENST00000606924 2538 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 AL359893.1-201ENST00000447628 1580 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.73□□□□□ -1.81
COL4A3Q01955 AL022311.1-201ENST00000623726 19416 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 SAGE4P-201ENST00000442271 3381 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL4A3Q01955 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.72□□□□□ -1.81
COL4A3Q01955 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 Y_RNA.80-201ENST00000362996 102 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 RNA5SP197-201ENST00000363357 119 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 Y_RNA.496-201ENST00000384444 101 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 SNORD17-201ENST00000390930 237 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 RNA5SP424-201ENST00000390988 115 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 SNORA48.5-201ENST00000391143 135 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 RNA5SP104-201ENST00000410989 118 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 RPLP0P7-201ENST00000416050 667 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.72□□□□□ -1.81
COL4A3Q01955 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.72□□□□□ -1.81
COL4A3Q01955 AC069285.2-201ENST00000440210 275 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.72□□□□□ -1.81
COL4A3Q01955 SNORD5.1-201ENST00000458800 75 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AP000942.1-201ENST00000463969 747 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AC087385.1-201ENST00000475062 312 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AC097462.2-201ENST00000504623 481 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.72□□□□□ -1.81
COL4A3Q01955 RNU6-323P-201ENST00000521915 107 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 AC113195.1-201ENST00000579952 141 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 MIR3945-201ENST00000581853 98 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AC018889.1-201ENST00000605372 397 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.72□□□□□ -1.81
COL4A3Q01955 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 IPO8P1-201ENST00000455509 3109 ntBASIC3.72□□□□□ -1.81
COL4A3Q01955 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC3.72□□□□□ -1.81
COL4A3Q01955 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
COL4A3Q01955 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.72□□□□□ -1.81
COL4A3Q01955 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC3.72□□□□□ -1.81
COL4A3Q01955 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
COL4A3Q01955 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC3.72□□□□□ -1.81
COL4A3Q01955 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A3Q01955 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL4A3Q01955 RNA5SP374-201ENST00000362939 125 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 RNU6-379P-201ENST00000363813 104 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 SNORA63.7-201ENST00000365579 123 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 RNU6-214P-201ENST00000384130 107 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 RNU6-1109P-201ENST00000391187 107 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AL139039.1-201ENST00000401900 692 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 Z99755.1-201ENST00000414048 380 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AC099677.1-201ENST00000420575 175 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AL590632.1-201ENST00000424289 371 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 RPL23AP50-201ENST00000434149 455 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.71□□□□□ -1.81
COL4A3Q01955 RPL23AP33-201ENST00000442301 452 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 MTCO3P45-201ENST00000443036 613 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 GSTA11P-201ENST00000452866 669 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AC012123.2-201ENST00000485809 248 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A3Q01955 AC116655.1-201ENST00000508324 901 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AC104136.1-201ENST00000512969 394 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A3Q01955 RNU6-237P-201ENST00000515985 71 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 Y_RNA.721-201ENST00000517207 102 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A3Q01955 AP005902.1-201ENST00000521358 186 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A3Q01955 AC005899.2-201ENST00000584353 90 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AL033523.1-201ENST00000605153 153 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 TUG1_2.1-201ENST00000614234 87 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AC004696.1-201ENST00000614345 607 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 AL359547.2-201ENST00000615810 418 ntBASIC3.71□□□□□ -1.81
COL4A3Q01955 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.71□□□□□ -1.81
COL4A3Q01955 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A3Q01955 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.71□□□□□ -1.81
COL4A3Q01955 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A3Q01955 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL4A3Q01955 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A3Q01955 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
COL4A3Q01955 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL4A3Q01955 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL4A3Q01955 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
COL4A3Q01955 AC027290.2-201ENST00000623210 18662 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.71□□□□□ -1.82
COL4A3Q01955 AC019155.1-201ENST00000382242 574 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 RNU6-146P-201ENST00000384602 108 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 Y_RNA.556-201ENST00000384677 113 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 RNU6-101P-201ENST00000410323 104 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 RPL30P3-201ENST00000424262 333 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms