Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 FP236240.3-201ENST00000623061 327 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HOXA4Q00056 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXA4Q00056 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA4Q00056 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXA4Q00056 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA4Q00056 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 Y_RNA.245-201ENST00000364493 95 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 RNU6-384P-201ENST00000364900 104 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXA4Q00056 Y_RNA.463-201ENST00000384271 102 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 SNORA75.6-201ENST00000391318 127 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 PPIAP31-201ENST00000405422 495 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA4Q00056 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXA4Q00056 AC018865.2-201ENST00000423631 129 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 RPL21P66-201ENST00000426566 466 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 AC097713.2-201ENST00000430199 356 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA4Q00056 RPS20P22-201ENST00000473700 357 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXA4Q00056 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA4Q00056 AC139453.3-201ENST00000493276 369 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA4Q00056 RNA5SP290-201ENST00000517133 127 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA4Q00056 AC022695.1-201ENST00000522089 237 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXA4Q00056 AC123912.5-201ENST00000605470 343 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 AC011890.2-201ENST00000613393 294 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 LINC00901.1-201ENST00000617252 152 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 AC103858.2-201ENST00000621471 543 ntBASIC3.3□□□□□ -1.88
HOXA4Q00056 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
HOXA4Q00056 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA4Q00056 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA4Q00056 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 AC005183.1-201ENST00000603687 1979 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 Y_RNA.2-201ENST00000362330 96 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 RN7SKP280-201ENST00000364196 304 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 RN7SKP227-201ENST00000364445 330 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 SNORA7.2-201ENST00000364446 145 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 RNU6-395P-201ENST00000365662 106 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 RNU6-842P-201ENST00000384269 107 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AL445529.1-201ENST00000398713 389 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AL592148.1-201ENST00000413568 445 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA4Q00056 AL356867.1-201ENST00000429623 299 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AC011742.1-201ENST00000431448 434 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 PIGFP3-201ENST00000441918 722 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA4Q00056 NOTCH2P1-201ENST00000443481 624 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AP000873.1-201ENST00000463987 400 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 RPS23P3-201ENST00000470993 430 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 KC877373.1-201ENST00000479066 408 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 HMGB1P30-201ENST00000492455 606 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AC026726.1-201ENST00000512859 601 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 RNU6-470P-201ENST00000515954 104 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 MIR892C-201ENST00000516410 77 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 SCARNA14-201ENST00000516903 136 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXA4Q00056 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA4Q00056 AP000942.4-201ENST00000604811 241 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AC007485.1-201ENST00000616755 206 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AC008121.3-201ENST00000618726 433 ntBASIC3.29□□□□□ -1.88
HOXA4Q00056 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA4Q00056 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXA4Q00056 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA4Q00056 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
HOXA4Q00056 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
HOXA4Q00056 NCAPGP1-201ENST00000505112 1814 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
HOXA4Q00056 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA4Q00056 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA4Q00056 MIR30B-201ENST00000384850 88 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 MIR517A-201ENST00000385001 87 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA4Q00056 SYF2P2-201ENST00000417620 583 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 RPS15AP6-201ENST00000420703 385 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA4Q00056 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXA4Q00056 MYL8P-204ENST00000431574 518 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms