Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.33□□□□□ -1.88
HDAC4P56524 AC007621.1-201ENST00000604544 437 ntBASIC3.33□□□□□ -1.88
HDAC4P56524 AC007363.1-201ENST00000604736 620 ntBASIC3.33□□□□□ -1.88
HDAC4P56524 uc_338.25-201ENST00000613756 156 ntBASIC3.33□□□□□ -1.88
HDAC4P56524 MIR7112-201ENST00000616126 65 ntBASIC3.33□□□□□ -1.88
HDAC4P56524 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HDAC4P56524 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HDAC4P56524 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.33□□□□□ -1.88
HDAC4P56524 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HDAC4P56524 SNORA38.1-201ENST00000364172 131 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 SNORA14A-201ENST00000364773 135 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 RNU6-61P-201ENST00000365528 109 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.32□□□□□ -1.88
HDAC4P56524 RNU6-946P-201ENST00000383878 107 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 RNU6-817P-201ENST00000391083 104 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 RNA5SP252-201ENST00000391131 119 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 RNU6-908P-201ENST00000410160 94 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.32□□□□□ -1.88
HDAC4P56524 Z85995.1-201ENST00000415547 335 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 MTND1P23-201ENST00000416931 372 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HDAC4P56524 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.32□□□□□ -1.88
HDAC4P56524 MRPS10P2-201ENST00000431226 381 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AL512844.2-201ENST00000433990 593 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AL596276.1-201ENST00000434465 418 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 RPL7P54-201ENST00000438336 674 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 ELOCP23-201ENST00000452014 332 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC3.32□□□□□ -1.88
HDAC4P56524 AC027673.1-201ENST00000456245 405 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.32□□□□□ -1.88
HDAC4P56524 AL031183.1-201ENST00000457667 207 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 RPL37P6-201ENST00000460682 294 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC083798.1-201ENST00000472671 131 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
HDAC4P56524 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.32□□□□□ -1.88
HDAC4P56524 UBE2DNL-203ENST00000474922 222 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC092989.1-201ENST00000481235 277 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC116562.3-201ENST00000506136 177 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 TTC39CP1-201ENST00000512513 755 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 RNA5SP291-201ENST00000517222 105 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 ATP5F1P5-201ENST00000526403 760 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC068587.5-201ENST00000528506 175 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 OR4R1P-201ENST00000529879 463 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 OR5BN1P-201ENST00000532955 829 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.32□□□□□ -1.88
HDAC4P56524 AL157687.1-201ENST00000554853 619 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.32□□□□□ -1.88
HDAC4P56524 HMGB1P6-201ENST00000569046 646 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 MIR4775-201ENST00000581168 75 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.32□□□□□ -1.88
HDAC4P56524 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.32□□□□□ -1.88
HDAC4P56524 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.32□□□□□ -1.88
HDAC4P56524 AL627309.6-201ENST00000606857 840 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC135507.2-201ENST00000612443 309 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC007998.5-201ENST00000622938 237 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC090617.7-201ENST00000623952 126 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.32□□□□□ -1.88
HDAC4P56524 MIR1321-201ENST00000637766 79 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.32□□□□□ -1.88
HDAC4P56524 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.32□□□□□ -1.88
HDAC4P56524 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HDAC4P56524 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HDAC4P56524 AC233263.6-201ENST00000631132 1963 ntBASIC3.32□□□□□ -1.88
HDAC4P56524 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HDAC4P56524 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDAC4P56524 RNU4-48P-201ENST00000365559 182 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 Y_RNA.402-201ENST00000383972 102 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 RNU6-606P-201ENST00000384721 111 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 MIR325-201ENST00000385260 98 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 MIR454-201ENST00000390180 115 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 U3.19-201ENST00000390893 196 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AL591416.1-201ENST00000404015 867 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 RNA5SP120-201ENST00000410900 112 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 AL139281.1-201ENST00000422120 335 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 MTCO1P20-201ENST00000425366 358 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 ELOCP14-201ENST00000428070 331 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AL139415.2-201ENST00000431968 163 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 AC000111.3-201ENST00000433478 193 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 ELOCP7-201ENST00000439968 331 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 RPL21P2-201ENST00000440049 481 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AC016691.1-201ENST00000441321 413 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 AL356010.1-201ENST00000456364 102 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 MTCO3P38-201ENST00000468910 766 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AC233702.1-201ENST00000482905 502 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HDAC4P56524 AP005435.4-201ENST00000529514 284 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.31□□□□□ -1.88
HDAC4P56524 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.31□□□□□ -1.88
HDAC4P56524 AL512310.1-201ENST00000548639 172 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.31□□□□□ -1.88
HDAC4P56524 AC034105.3-201ENST00000565294 442 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 BNIP3P30-201ENST00000601184 574 ntBASIC3.31□□□□□ -1.88
HDAC4P56524 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms