Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX2P48431 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.22□□□□□ -1.89
SOX2P48431 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX2P48431 AC008526.1-201ENST00000509149 338 ntBASIC3.22□□□□□ -1.89
SOX2P48431 RNU6-559P-201ENST00000516151 98 ntBASIC3.22□□□□□ -1.89
SOX2P48431 RNA5SP164-201ENST00000516533 110 ntBASIC3.22□□□□□ -1.89
SOX2P48431 RNU6-1332P-201ENST00000516666 104 ntBASIC3.22□□□□□ -1.89
SOX2P48431 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX2P48431 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX2P48431 AP005639.2-201ENST00000527592 928 ntBASIC3.22□□□□□ -1.89
SOX2P48431 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX2P48431 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.22□□□□□ -1.89
SOX2P48431 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX2P48431 AC016727.1-205ENST00000605437 569 ntBASIC3.22□□□□□ -1.89
SOX2P48431 U7.8-201ENST00000619968 63 ntBASIC3.22□□□□□ -1.89
SOX2P48431 PLCE1P1-201ENST00000622094 305 ntBASIC3.22□□□□□ -1.89
SOX2P48431 AC112484.5-201ENST00000624189 228 ntBASIC3.22□□□□□ -1.89
SOX2P48431 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX2P48431 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX2P48431 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
SOX2P48431 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX2P48431 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SOX2P48431 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX2P48431 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SOX2P48431 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.89
SOX2P48431 AC010733.2-201ENST00000589496 5702 ntBASIC3.21□□□□□ -1.89
SOX2P48431 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX2P48431 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.21□□□□□ -1.9
SOX2P48431 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
SOX2P48431 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX2P48431 MIR412-201ENST00000362142 91 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RNU6-562P-201ENST00000362731 107 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RNU6-1297P-201ENST00000384415 104 ntBASIC3.21□□□□□ -1.9
SOX2P48431 MIR325-201ENST00000385260 98 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AL360182.1-201ENST00000397433 468 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RN7SKP158-201ENST00000410453 326 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.21□□□□□ -1.9
SOX2P48431 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX2P48431 YPEL5P1-201ENST00000419731 367 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC006989.1-201ENST00000427212 131 ntBASIC3.21□□□□□ -1.9
SOX2P48431 SAR1AP4-201ENST00000429225 591 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RPS3AP52-201ENST00000435639 297 ntBASIC3.21□□□□□ -1.9
SOX2P48431 SETP5-201ENST00000437270 562 ntBASIC3.21□□□□□ -1.9
SOX2P48431 U3.44-201ENST00000458938 192 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RNU7-138P-201ENST00000459479 64 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC104472.2-201ENST00000469035 601 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC006463.2-201ENST00000473326 348 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RPS27P27-201ENST00000498779 255 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.21□□□□□ -1.9
SOX2P48431 MTND5P5-201ENST00000503764 376 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX2P48431 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.21□□□□□ -1.9
SOX2P48431 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX2P48431 RN7SKP24-201ENST00000515888 284 ntBASIC3.21□□□□□ -1.9
SOX2P48431 MIR892C-201ENST00000516410 77 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RNU6-1282P-201ENST00000516735 96 ntBASIC3.21□□□□□ -1.9
SOX2P48431 Y_RNA.701-201ENST00000516812 110 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RNA5SP165-201ENST00000517142 115 ntBASIC3.21□□□□□ -1.9
SOX2P48431 RAB9BP1-201ENST00000519581 626 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SOX2P48431 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX2P48431 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.21□□□□□ -1.9
SOX2P48431 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX2P48431 TRAV37-201ENST00000553906 342 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX2P48431 AL670379.10-201ENST00000604330 253 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AL670379.9-201ENST00000605428 253 ntBASIC3.21□□□□□ -1.9
SOX2P48431 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.21□□□□□ -1.9
SOX2P48431 OR52H1-202ENST00000641796 1061 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AL732372.2-225ENST00000642124 456 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC007656.2-201ENST00000624902 4547 ntBASIC3.21□□□□□ -1.9
SOX2P48431 ZNF519P1-201ENST00000449011 1626 ntBASIC3.21□□□□□ -1.9
SOX2P48431 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
SOX2P48431 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
SOX2P48431 AL049641.1-201ENST00000441055 1948 ntBASIC3.21□□□□□ -1.9
SOX2P48431 AC090740.1-201ENST00000623193 2262 ntBASIC3.21□□□□□ -1.9
SOX2P48431 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SOX2P48431 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SOX2P48431 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SOX2P48431 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX2P48431 XGY1-201ENST00000381172 446 ntBASIC3.2□□□□□ -1.9
SOX2P48431 RNU6-214P-201ENST00000384130 107 ntBASIC3.2□□□□□ -1.9
SOX2P48431 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SOX2P48431 RNU2-68P-201ENST00000410878 191 ntBASIC3.2□□□□□ -1.9
SOX2P48431 CYCSP33-201ENST00000414485 327 ntBASIC3.2□□□□□ -1.9
SOX2P48431 MTCO2P27-201ENST00000420740 428 ntBASIC3.2□□□□□ -1.9
SOX2P48431 AC018644.1-201ENST00000429934 551 ntBASIC3.2□□□□□ -1.9
SOX2P48431 AL158071.1-201ENST00000430315 461 ntBASIC3.2□□□□□ -1.9
SOX2P48431 AL512844.2-201ENST00000433990 593 ntBASIC3.2□□□□□ -1.9
SOX2P48431 AC092573.2-201ENST00000434546 243 ntBASIC3.2□□□□□ -1.9
SOX2P48431 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX2P48431 AL359672.1-201ENST00000442302 409 ntBASIC3.2□□□□□ -1.9
SOX2P48431 MTND1P17-201ENST00000448961 204 ntBASIC3.2□□□□□ -1.9
SOX2P48431 SNORD19B-201ENST00000459623 84 ntBASIC3.2□□□□□ -1.9
SOX2P48431 RPS23P3-201ENST00000470993 430 ntBASIC3.2□□□□□ -1.9
SOX2P48431 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX2P48431 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX2P48431 NDUFB9P3-201ENST00000521269 501 ntBASIC3.2□□□□□ -1.9
SOX2P48431 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.2□□□□□ -1.9
SOX2P48431 AC025423.5-201ENST00000550230 219 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms