Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.37□□□□□ -2.03
SDC1P18827 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SDC1P18827 SNORD56.5-201ENST00000364281 72 ntBASIC2.37□□□□□ -2.03
SDC1P18827 SNORA9-201ENST00000384215 133 ntBASIC2.37□□□□□ -2.03
SDC1P18827 Y_RNA.534-201ENST00000384599 112 ntBASIC2.37□□□□□ -2.03
SDC1P18827 MIR34A-201ENST00000385130 110 ntBASIC2.37□□□□□ -2.03
SDC1P18827 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
SDC1P18827 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
SDC1P18827 RNU6-248P-201ENST00000410720 107 ntBASIC2.37□□□□□ -2.03
SDC1P18827 RN7SKP142-201ENST00000411236 328 ntBASIC2.37□□□□□ -2.03
SDC1P18827 NDUFS5P4-201ENST00000412983 318 ntBASIC2.37□□□□□ -2.03
SDC1P18827 RPL26P27-201ENST00000414397 437 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.37□□□□□ -2.03
SDC1P18827 ARL5AP4-201ENST00000430731 512 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AL591212.2-201ENST00000433923 257 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.37□□□□□ -2.03
SDC1P18827 AC009961.2-201ENST00000435771 251 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.37□□□□□ -2.03
SDC1P18827 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.37□□□□□ -2.03
SDC1P18827 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SDC1P18827 AC009961.3-201ENST00000449832 765 ntBASIC2.37□□□□□ -2.03
SDC1P18827 GAPDHP17-201ENST00000449858 1001 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.37□□□□□ -2.03
SDC1P18827 SNORA31.15-201ENST00000516771 132 ntBASIC2.37□□□□□ -2.03
SDC1P18827 RNU6-677P-201ENST00000516914 101 ntBASIC2.37□□□□□ -2.03
SDC1P18827 SUB1P1-201ENST00000524415 382 ntBASIC2.37□□□□□ -2.03
SDC1P18827 OR5BN1P-201ENST00000532955 829 ntBASIC2.37□□□□□ -2.03
SDC1P18827 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.37□□□□□ -2.03
SDC1P18827 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.37□□□□□ -2.03
SDC1P18827 MIR3167-201ENST00000579623 85 ntBASIC2.37□□□□□ -2.03
SDC1P18827 MIR3200-201ENST00000580767 85 ntBASIC2.37□□□□□ -2.03
SDC1P18827 BNIP3P22-201ENST00000593399 556 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AC110760.3-201ENST00000598794 467 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AC010620.2-201ENST00000600135 313 ntBASIC2.37□□□□□ -2.03
SDC1P18827 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.37□□□□□ -2.03
SDC1P18827 AC022893.3-201ENST00000607665 437 ntBASIC2.37□□□□□ -2.03
SDC1P18827 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SDC1P18827 ZNF519P1-201ENST00000449011 1626 ntBASIC2.37□□□□□ -2.03
SDC1P18827 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.37□□□□□ -2.03
SDC1P18827 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.37□□□□□ -2.03
SDC1P18827 Z82195.2-201ENST00000612348 18351 ntBASIC2.37□□□□□ -2.03
SDC1P18827 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SDC1P18827 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
SDC1P18827 Y_RNA.22-201ENST00000362492 102 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
SDC1P18827 SNORA20.2-201ENST00000383922 131 ntBASIC2.36□□□□□ -2.03
SDC1P18827 RNU6-190P-201ENST00000384154 102 ntBASIC2.36□□□□□ -2.03
SDC1P18827 FO393413.1-201ENST00000402892 195 ntBASIC2.36□□□□□ -2.03
SDC1P18827 RNA5SP181-201ENST00000410246 98 ntBASIC2.36□□□□□ -2.03
SDC1P18827 RNU2-8P-201ENST00000410727 190 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC127391.1-201ENST00000411737 98 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.36□□□□□ -2.03
SDC1P18827 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 RPS24P1-201ENST00000438550 371 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC009296.1-201ENST00000443146 155 ntBASIC2.36□□□□□ -2.03
SDC1P18827 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.36□□□□□ -2.03
SDC1P18827 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC1P18827 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.36□□□□□ -2.03
SDC1P18827 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SDC1P18827 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.36□□□□□ -2.03
SDC1P18827 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC1P18827 AC093899.1-201ENST00000457984 376 ntBASIC2.36□□□□□ -2.03
SDC1P18827 snoU109.1-201ENST00000459339 135 ntBASIC2.36□□□□□ -2.03
SDC1P18827 RPL31P41-201ENST00000477967 372 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC097462.2-201ENST00000504623 481 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 AC091965.2-201ENST00000512324 613 ntBASIC2.36□□□□□ -2.03
SDC1P18827 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 MRPS36P2-201ENST00000512569 299 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 RNA5SP320-201ENST00000516263 124 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AP003122.3-201ENST00000526316 255 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC084851.1-201ENST00000529105 249 ntBASIC2.36□□□□□ -2.03
SDC1P18827 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.36□□□□□ -2.03
SDC1P18827 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC1P18827 AC025281.1-201ENST00000567026 265 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC011471.1-201ENST00000585766 187 ntBASIC2.36□□□□□ -2.03
SDC1P18827 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.36□□□□□ -2.03
SDC1P18827 BNIP3P9-201ENST00000603714 553 ntBASIC2.36□□□□□ -2.03
SDC1P18827 SEPT7P9-203ENST00000604116 343 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AL161756.2-201ENST00000604597 246 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AL035413.2-201ENST00000604801 525 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC013562.2-201ENST00000611632 603 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AL133173.2-201ENST00000614270 90 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AL158063.1-201ENST00000615349 536 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AP001506.1-201ENST00000615444 211 ntBASIC2.36□□□□□ -2.03
SDC1P18827 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
SDC1P18827 PISRT1-201ENST00000626175 531 ntBASIC2.36□□□□□ -2.03
SDC1P18827 AC110994.2-201ENST00000635481 492 ntBASIC2.36□□□□□ -2.03
SDC1P18827 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.36□□□□□ -2.03
SDC1P18827 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC1P18827 AC110491.1-201ENST00000562191 2010 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AC073343.1-201ENST00000328239 651 ntBASIC2.35□□□□□ -2.03
SDC1P18827 MIR558-201ENST00000384920 94 ntBASIC2.35□□□□□ -2.03
SDC1P18827 MIR27B-201ENST00000385129 97 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms