Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU2-31P-201ENST00000516954 155 ntBASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 MIR2355-201ENST00000517199 87 ntBASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 AC023575.1-201ENST00000580510 358 ntBASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 MIR3176-201ENST00000582210 90 ntBASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 U6.106-201ENST00000636360 105 ntBASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HIF3AQ9Y2N7 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 SCN1A-220ENST00000641603 12506 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 Y_RNA.504-201ENST00000384481 104 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 MIR10A-201ENST00000385043 110 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 RPL36AP10-201ENST00000421785 322 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AL358453.1-201ENST00000422522 250 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 RPS26P39-201ENST00000469206 341 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 RN7SL97P-201ENST00000486780 299 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 RN7SL30P-201ENST00000488416 306 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-1256P-201ENST00000516539 103 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 MRPS18CP4-201ENST00000535821 231 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 H3F3AP1-201ENST00000559984 334 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AC090617.3-201ENST00000573670 475 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AC037487.3-201ENST00000606668 112 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AC019206.1-201ENST00000621938 425 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 AC139713.2-215ENST00000641428 5037 ntBASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HIF3AQ9Y2N7 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL136964.1-201ENST00000622038 2990 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 SNORA74A-201ENST00000364089 198 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 Y_RNA.240-201ENST00000364469 95 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-1027P-201ENST00000383998 107 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-1035P-201ENST00000384477 107 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-918P-201ENST00000391219 106 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL078599.1-201ENST00000402075 293 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 MIR1178-201ENST00000408396 91 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-394P-201ENST00000410735 107 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RNU2-61P-201ENST00000411069 191 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL355433.1-201ENST00000422804 300 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 NDUFB4P7-201ENST00000423198 363 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 EIF4HP2-201ENST00000424380 563 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL356867.1-201ENST00000429623 299 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 SETP5-201ENST00000437270 562 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC000111.2-201ENST00000448200 210 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 SNORD108-201ENST00000459332 71 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL591473.1-201ENST00000464297 313 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RNA5SP290-201ENST00000517133 127 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC092490.3-201ENST00000545370 572 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC027288.2-201ENST00000553028 243 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RPL21P7-201ENST00000557463 483 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC233702.9-201ENST00000581528 203 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL139395.1-201ENST00000603662 160 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC011921.3-201ENST00000605540 361 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC211433.2-201ENST00000608433 387 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 MIR8069-1-201ENST00000616627 86 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 MIR8069-2-201ENST00000621412 86 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC025031.4-201ENST00000621248 3271 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 AC135776.4-201ENST00000624300 1904 ntBASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HIF3AQ9Y2N7 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms