Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Vault.3-201ENST00000516676 95 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC026241.1-201ENST00000517873 2142 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 NBR2-204ENST00000587322 63 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC005046.1-201ENST00000608515 625 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC093783.1-201ENST00000612976 329 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 FRG1KP-201ENST00000623592 341 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC092447.7-201ENST00000422212 1621 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.96□□□□□ -1.93
CPSF3Q9UKF6 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
CPSF3Q9UKF6 RNU6-960P-201ENST00000364056 120 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 RNU6-512P-201ENST00000364438 103 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 RNU6-169P-201ENST00000365336 107 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 MIR181B1-201ENST00000385240 110 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 MIR767-201ENST00000390228 109 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 MTND3P17-201ENST00000416968 344 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AL513477.1-202ENST00000417061 214 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 C1DP2-201ENST00000418167 426 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 ELOCP14-201ENST00000428070 331 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 RPL31P35-201ENST00000431058 377 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 ELOCP7-201ENST00000439968 331 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 SEM1P1-201ENST00000506694 209 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC079140.3-201ENST00000511111 550 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 SNORA9.3-201ENST00000516383 129 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 SCARNA24.1-201ENST00000516465 137 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 MIR4528-201ENST00000577763 90 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC006566.1-201ENST00000608943 513 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 FTX_3.1-201ENST00000610451 147 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC009090.3-201ENST00000616553 565 ntBASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CPSF3Q9UKF6 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AL137003.2-201ENST00000606924 2538 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 Y_RNA.22-201ENST00000362492 102 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 RNU6-288P-201ENST00000363690 104 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 SNORA5B-201ENST00000363786 132 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 Y_RNA.359-201ENST00000365498 102 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 RNU6-946P-201ENST00000383878 107 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 MIR558-201ENST00000384920 94 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 RNU6-817P-201ENST00000391083 104 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 BX295541.1-201ENST00000417774 250 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC098614.2-201ENST00000426040 255 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AL358075.3-201ENST00000426289 226 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC009414.1-201ENST00000427200 443 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC104651.1-201ENST00000427559 735 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 RPS24P1-201ENST00000438550 371 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC073614.1-201ENST00000438690 650 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 KATNBL1P3-201ENST00000443475 909 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 CECR9-201ENST00000453421 199 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 FABP5P15-201ENST00000453566 214 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 KLF3P2-201ENST00000465138 268 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC233702.1-201ENST00000482905 502 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC007182.2-201ENST00000489251 402 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 MTND4P2-201ENST00000507767 1203 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC105313.1-201ENST00000509121 353 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC113155.1-201ENST00000511141 769 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 MTCO3P28-201ENST00000513351 515 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AL391261.3-201ENST00000557194 520 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 NRBF2P1-201ENST00000587407 859 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC005498.1-201ENST00000592125 465 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC069234.5-201ENST00000611056 416 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AL365204.3-201ENST00000612448 685 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC048344.4-201ENST00000619744 527 ntBASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 268.4 ms